PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.11793s0064.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

Protein Properties

Length: 275aa MW: 30940.5 Da PI: 4.4654

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.11793s0064.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	62	9.6e-20	13	101	1	97
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 ffkv+ + ++s + +p +f+e+ + + t +l+ + g+ W+v + +k +++ ++t+GW++F+++++L +g+f++F +dg+++ Bostr.11793s0064.1.p 13 FFKVF--LSETASESFAIPLSFMEHLADP--LPNTAKLQGTGGKDWTVSM--TKIRDGAYFTAGWSKFAEDHELVDGEFLTFVYDGHQT 95 89999..666666679*****666655..889************..******************************99888 PP E..EEEEE CS B3 90 felvvkvf 97 f v+vf Bostr.11793s0064.1.p 96 F--EVSVF 101 8..77776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	13.239	11	104	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	3.92E-22	11	105	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	8.50E-18	11	101	No hit	No description
Gene3D	G3DSA:2.40.330.10	1.5E-22	11	103	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	1.7E-16	13	101	IPR003340	B3 DNA binding domain
SMART	SM01019	7.5E-20	13	104	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	1.53E-7	176	258	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.8E-5	176	259	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	0.067	180	269	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MADNEDDLLL PRFFKVFLSE TASESFAIPL SFMEHLADPL PNTAKLQGTG GKDWTVSMTK 60 IRDGAYFTAG WSKFAEDHEL VDGEFLTFVY DGHQTFEVSV FGRLGCKETR AVAETIELSG 120 SSSDSEEGEE PSMDVDDDTS LGEDEEISQS IYPFEDEETE SDAAVFAGNL SIEALNNPHF 180 STTLKNRIYE LLIPANVVKE NKLRFGDSVK YIDEEGTLVG LRGKWADDRI CFKGWDRICR 240 RNRLKKHQDT VECELLHEKK KVHSIRIHVM RGTP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1yel_A	5e-20	12	106	10	104	At1g16640
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.11793s0064.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006293000.1	1e-170	B3 domain-containing protein REM20
Swissprot	Q8LAV5	1e-126	REM20_ARATH; B3 domain-containing protein REM20
TrEMBL	R0HPM7	1e-168	R0HPM7_9BRAS; Uncharacterized protein
STRING	Bostr.11793s0064.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1561	23	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53310.1	1e-123	B3 family protein

Link Out ? help Back to Top
Phytozome	Bostr.11793s0064.1.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]