PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.11793s0058.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

S1Fa-like

Protein Properties

Length: 77aa MW: 8252.96 Da PI: 10.608

Description

S1Fa-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.11793s0058.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	S1FA	132.3	1.3e-41	8	76	2	70
S1FA 2 avakveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 ++a++eakGlnPGlivllvvg +l+vfl++ny+lyvyaqknlPPrkkkP skkklkreklkqGv+vPGe Bostr.11793s0058.1.p 8 GKAAAEAKGLNPGLIVLLVVGIPLIVFLIANYVLYVYAQKNLPPRKKKPPSKKKLKREKLKQGVPVPGE 76 57899***************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04689	2.1E-36	12	76	IPR006779	DNA binding protein S1FA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 77 aa Download sequence Send to blast
MDDDGFAGKA AAEAKGLNPG LIVLLVVGIP LIVFLIANYV LYVYAQKNLP PRKKKPPSKK 60 KLKREKLKQG VPVPGE*

Functional Description ? help Back to Top
Source	Description
UniProt	DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.11793s0058.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF370176	3e-95	AF370176.1 Arabidopsis thaliana unknown protein (At3g53370) mRNA, complete cds.
GenBank	AY059136	3e-95	AY059136.1 Arabidopsis thaliana unknown protein (At3g53370) mRNA, complete cds.
GenBank	AY088845	3e-95	AY088845.1 Arabidopsis thaliana clone 97045 mRNA, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013600217.1	9e-23	PREDICTED: DNA-binding protein S1FA1
Refseq	XP_013730236.1	9e-23	DNA-binding protein S1FA1
Swissprot	Q42337	7e-23	S1FA2_ARATH; DNA-binding protein S1FA2
TrEMBL	A0A078J2Z0	2e-21	A0A078J2Z0_BRANA; BnaCnng30990D protein
TrEMBL	A0A3P6GBG2	2e-21	A0A3P6GBG2_BRAOL; Uncharacterized protein
STRING	Bostr.11793s0058.1.p	2e-45	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2823	27	69

Link Out ? help Back to Top
Phytozome	Bostr.11793s0058.1.p