PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.10689s0126.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 763aa MW: 83548.2 Da PI: 5.7516 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.4 | 2.9e-19 | 63 | 118 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t+ q++eLe++F+++++p+ ++r+eL+++l+L+ qVk+WFqN+R+++k Bostr.10689s0126.1.p 63 KKRYHRHTQRQIQELESFFKECPHPDDKQRKELSRELSLEPLQVKFWFQNKRTQMK 118 688999***********************************************998 PP | |||||||
2 | START | 213.7 | 6.7e-67 | 262 | 481 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.... CS START 1 elaeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla.... 77 ela +a++elv++a+ ++p+Wv+ e++n++e+ ++f+++ + + ea+r+s+vv+m++ +l e+l+d++ qW+ + Bostr.10689s0126.1.p 262 ELAVAAMEELVRMAQTGDPLWVSNDnsvEILNEEEYFRTFPRGIGpkpigLRLEASRESTVVIMNHINLIEILMDVN-QWSSVFCgivs 349 57899*****************998889**************999********************************.******99999 PP EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECT CS START 78 kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksn 159 +a tlev+s+g galq+m+ae+q++splvp R+ +fvRy++++++g w++vdvS+ds ++ p + R++++pSg+li++++n Bostr.10689s0126.1.p 350 RALTLEVLSTGvagnydGALQVMTAEFQVPSPLVPtRENYFVRYCKKHSDGIWAVVDVSLDSLRPSP----ITRSRRRPSGCLIQELQN 434 *****************************************************************99....7***************** PP CEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 160 ghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 g+skvtwveh+++++r++h+++++lv++gla+gak+wvatl+rqce+ Bostr.10689s0126.1.p 435 GYSKVTWVEHTEVDDRSVHSMYKPLVNTGLAFGAKRWVATLDRQCER 481 *********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.0E-22 | 44 | 118 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.59E-18 | 52 | 120 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.006 | 60 | 120 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.5E-17 | 61 | 124 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 7.5E-17 | 63 | 118 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.64E-18 | 63 | 121 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 95 | 118 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 45.97 | 253 | 484 | IPR002913 | START domain |
SuperFamily | SSF55961 | 3.71E-35 | 255 | 483 | No hit | No description |
CDD | cd08875 | 3.19E-123 | 257 | 480 | No hit | No description |
SMART | SM00234 | 1.6E-78 | 262 | 481 | IPR002913 | START domain |
Pfam | PF01852 | 4.1E-56 | 263 | 481 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 6.8E-6 | 360 | 480 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 9.34E-23 | 502 | 680 | No hit | No description |
SuperFamily | SSF55961 | 9.34E-23 | 715 | 754 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0009913 | Biological Process | epidermal cell differentiation | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0090627 | Biological Process | plant epidermal cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 763 aa Download sequence Send to blast |
MYHPNMFESH HHMFDMTLKN SENDLGITGS REEDFETKSG AEVTMENPLE EELQDPNQRP 60 NKKKRYHRHT QRQIQELESF FKECPHPDDK QRKELSRELS LEPLQVKFWF QNKRTQMKAQ 120 HERHENQILK SENDKFRAEN NRYKDALSNA TCPNCGGPAA IGEMSFDEQH LRIENARLRE 180 EIDRISAIAA KYVGKPLLAN SSPFPQLTSS HHIPSRSLNL EVGNFGNNSN SQAGFVGEMY 240 GTSDILRSVS IPSEADKTMI VELAVAAMEE LVRMAQTGDP LWVSNDNSVE ILNEEEYFRT 300 FPRGIGPKPI GLRLEASRES TVVIMNHINL IEILMDVNQW SSVFCGIVSR ALTLEVLSTG 360 VAGNYDGALQ VMTAEFQVPS PLVPTRENYF VRYCKKHSDG IWAVVDVSLD SLRPSPITRS 420 RRRPSGCLIQ ELQNGYSKVT WVEHTEVDDR SVHSMYKPLV NTGLAFGAKR WVATLDRQCE 480 RLASSMASNI PAGDLSVITS AEGRKSMLKL AERMVMSFCS GVGASTAHAW TTLSATGSDD 540 VRVMTRKSMD DPGRPPGIVL SAATSFWIPV APKRVFDFLR DENSRSEWDI LSNGGLVQEM 600 AHIANGRDPG NSVSLLRVNS GNSGQTNMLI LQESCTDSSG SYVIYAPVDI MAMNVVLSGG 660 DPDYVALLPS GFAILPDGSA RDGGGSASAG AGAGAEGGRE GNNLEVVTTT GNSGGSLLTV 720 AFQILVDSVP TAKLSLGSVA TVNSLIKCTV ERIKAAVACD GA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in cell specification and pattern formation during embryogenesis. Binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to PDF2. {ECO:0000269|PubMed:11439135, ECO:0000269|PubMed:12505995}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.10689s0126.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK229970 | 0.0 | AK229970.1 Arabidopsis thaliana mRNA for L1 specific homeobox gene ATML1/ovule-specific homeobox protein A20, complete cds, clone: RAFL22-43-B20. | |||
GenBank | AY091104 | 0.0 | AY091104.1 Arabidopsis thaliana putative L1-specific homeobox gene ATML1/ovule-specific homeobox protein A20 (At4g21750) mRNA, complete cds. | |||
GenBank | AY150491 | 0.0 | AY150491.1 Arabidopsis thaliana putative L1-specific homeobox gene ATML1/ovule-specific homeobox protein A20 (At4g21750) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010439429.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein MERISTEM L1 | ||||
Refseq | XP_010439430.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein MERISTEM L1 | ||||
Swissprot | Q8RWU4 | 0.0 | ATML1_ARATH; Homeobox-leucine zipper protein MERISTEM L1 | ||||
TrEMBL | R0GNC9 | 0.0 | R0GNC9_9BRAS; Uncharacterized protein | ||||
STRING | Bostr.10689s0126.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM491 | 28 | 149 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21750.2 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Bostr.10689s0126.1.p |