PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.10689s0108.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family LSD
Protein Properties Length: 152aa    MW: 16610.9 Da    PI: 5.2915
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.10689s0108.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD141.91.7e-136286125
               zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                          Cg+Cr lLsY rG+++V+C++C+t+
  Bostr.10689s0108.1.p 62 CGSCRRLLSYLRGSKHVKCSCCQTI 86
                          ***********************97 PP
2zf-LSD137.73.3e-12100125125
               zf-LSD1   1 CggCrtlLsYPrGA.psVRCalCdtV 25 
                           C++C+ lL+YP+GA psVRC++C+ V
  Bostr.10689s0108.1.p 100 CNNCKLLLMYPYGAaPSVRCSSCNSV 125
                           *************649********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010539.4E-185989IPR005735Zinc finger, LSD1-type
PfamPF069433.2E-106286IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.2E-997126IPR005735Zinc finger, LSD1-type
PfamPF069432.9E-9100125IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009617Biological Processresponse to bacterium
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MEEIQTQKKE ERKNCEEEEE EGGPPPGWES ALLPPPSTAT ATAAANPNPT TVEILEMAQM  60
VCGSCRRLLS YLRGSKHVKC SCCQTINLVL EANQVGQVNC NNCKLLLMYP YGAAPSVRCS  120
SCNSVTDIRE DNKRPPWSEQ QGPLKSLSNV R*
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.10689s0108.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0117601e-146BT011760.1 Arabidopsis thaliana At4g21610 mRNA, complete cds.
GenBankBT0123841e-146BT012384.1 Arabidopsis thaliana At4g21610 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_193892.13e-75lsd one like 2
SwissprotO654263e-76LOL2_ARATH; Protein LOL2
TrEMBLA0A178UWB77e-74A0A178UWB7_ARATH; LOL2
STRINGBostr.10689s0108.1.p1e-106(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136112226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21610.11e-61lsd one like 2