PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.10689s0100.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family B3
Protein Properties Length: 745aa    MW: 83581.4 Da    PI: 8.0886
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.10689s0100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.41.1e-17322421198
                           EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                           f+k l+ sd+++ grlvlpkk+ae++  ++++ e++ l+++d+ g++W++++++  +++s++yvl+ G     ++ +L++gD+v+F++ 
  Bostr.10689s0100.1.p 322 FEKMLSASDTGRVGRLVLPKKCAEAFlpQISHSEGVPLKIQDPMGKEWTFQFRFwpNNNSRMYVLE-GVTPCIQSLQLQTGDTVIFSRL 409
                           89**************************88888999****************9989999999***9.********************65 PP

                           SSSEE..EEEEE- CS
                    B3  86 grsefelvvkvfr 98 
                           +  +++l +++++
  Bostr.10689s0100.1.p 410 D-PGRKLILGFRK 421
                           4.66666666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.5E-27314432IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-19320421IPR015300DNA-binding pseudobarrel domain
CDDcd100176.78E-21320421No hitNo description
PROSITE profilePS5086310.969322423IPR003340B3 DNA binding domain
PfamPF023621.7E-14322421IPR003340B3 DNA binding domain
SMARTSM010194.0E-20322423IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 745 aa     Download sequence    Send to blast
MLSSMSSSRF CFNHECFEFK LDHYRPGWRL RTGDFADLCD RCASVYEQGK FCDVFHLKAS  60
GWRCCESCGK RIHCGCIVSA SAFMLLDAGG IECLACTRKK VALGPNFSPS PSFLFQSPVS  120
EKFKDLSINW SSSTRSNQIS YQPPSCLGAS VLQFDLRNRG DNNEFIQPTS KERATACSME  180
KKRGMNDMIG KLMSENSKNY KVSPFPNVNV YHPLISIKEG SCGTQLVFPV PITTPIEKTG  240
HSRLDGSNLW HTPNCSPLSR LHNDLNGGAD LPFESKSRNV GTHLDTPGKY QVVPRYFPKV  300
SYKNQVLQNQ SKESESVVTH LFEKMLSASD TGRVGRLVLP KKCAEAFLPQ ISHSEGVPLK  360
IQDPMGKEWT FQFRFWPNNN SRMYVLEGVT PCIQSLQLQT GDTVIFSRLD PGRKLILGFR  420
KASVAQSSDQ ETDSTNNNRD TCANRDAEPA DMHSLSKVKN SAYITKETPG VEFSSSKKKS  480
SMMFTRGKRQ KVEKGDHIEL KLTWEEAQGF LLPPPNLTPS RVVIEDYEFE EYEDAPIFGK  540
PTDDTSFRVP CTADKKLVAE QHDEEAMEEV EGLLMLPKTT TKHPRHRNGC TCIVCIQSPS  600
GTGPKHDRCC SCVVCETVKR RRRSLLLRRE KKQMGKEDDA HKELEQPNSD NELCQSANNS  660
ENHERHASPL KGQLDLNFKP EKNGEYLPCS NKTTKKKTLH HDDTVKSSFK SPSSSSDHSQ  720
INKEDEAELK KNTEIADTTT TSSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C4e-533024253126B3 domain-containing transcription repressor VAL1
5yzz_C4e-533024253126B3 domain-containing transcription repressor VAL1
5z00_C4e-533024253126B3 domain-containing transcription repressor VAL1
5z00_G4e-533024253126B3 domain-containing transcription repressor VAL1
5z00_K4e-533024253126B3 domain-containing transcription repressor VAL1
5z00_M4e-533024253126B3 domain-containing transcription repressor VAL1
6fas_A3e-533184235110B3 domain-containing transcription repressor VAL1
6fas_B3e-533184235110B3 domain-containing transcription repressor VAL1
6j9a_A5e-533024254127B3 domain-containing transcription repressor VAL1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in plant development. {ECO:0000269|PubMed:17158584}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.10689s0100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0226030.0AL022603.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F18E5 (ESSAII project).
GenBankAL1615550.0AL161555.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 55.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006283162.20.0B3 domain-containing transcription factor VAL3 isoform X1
SwissprotO654200.0VAL3_ARATH; B3 domain-containing transcription factor VAL3
TrEMBLR0GUV90.0R0GUV9_9BRAS; Uncharacterized protein (Fragment)
STRINGBostr.10689s0100.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM68572536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21550.10.0VP1/ABI3-like 3