PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.10689s0053.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family Dof
Protein Properties Length: 250aa    MW: 27997.8 Da    PI: 8.7177
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.10689s0053.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof120.65.7e-382177561
                zf-Dof  5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                           + cprC+s+ntkfCyynnys+sqPryfCk+CrryWt+GGalrn+P+Gg++rk k+ 
  Bostr.10689s0053.1.p 21 LRVCPRCNSDNTKFCYYNNYSVSQPRYFCKNCRRYWTHGGALRNIPIGGSCRKPKRP 77
                          678**************************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074784.0E-261676IPR003851Zinc finger, Dof-type
PfamPF027012.3E-322276IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.8262276IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102460IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010154Biological Processfruit development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000032Biological Processregulation of secondary shoot formation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MDNLNVLAKE DNQVNEEKTP LRVCPRCNSD NTKFCYYNNY SVSQPRYFCK NCRRYWTHGG  60
ALRNIPIGGS CRKPKRPKID QSSVSQMVSV ENQPVNHQPF RHVQENNEFV GSFGGSSSSS  120
SSSSSSAFVG NHLGYLTELH GVTNVPPVRS FRPIMDRLDF GDESFQDYYD VGSNDLIGNP  180
LINQSIGGYV DNHNSYCINQ VDQHKWNQSF NNTMNVNHKA SSSGSRGSSG TEMNKKNNKI  240
RSNCLFRSS*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.10689s0053.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002869911.11e-125dof zinc finger protein DOF4.4
SwissprotQ9SUA91e-107DOF44_ARATH; Dof zinc finger protein DOF4.4
TrEMBLD7MFF81e-124D7MFF8_ARALL; Dof-type zinc finger domain-containing protein
STRINGBostr.10689s0053.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16021789
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21050.11e-104Dof-type zinc finger domain-containing protein