PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.1040s0052.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | ARF | ||||||||
Protein Properties | Length: 564aa MW: 64136.6 Da PI: 6.7535 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 60.4 | 3.1e-19 | 118 | 192 | 26 | 99 |
T...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 26 h...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 + +++++++++l+ +d++g +W++k+++r++++r+++t+GW+ F+ ++L +gD++vF + +++el+v+++r+ Bostr.1040s0052.1.p 118 NkkpDMSQPSPTQLVAKDLHGHEWRFKHTFRGTPRRHLFTSGWSTFATKKRLIAGDTFVFV--RGENGELRVGIRRA 192 3445666779999************************************************..449999******97 PP | |||||||
2 | Auxin_resp | 102.3 | 6.3e-34 | 217 | 296 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 ++ha++++++F vvY+Pr+ s+Fvv+++k+++a++ ++ vG+Rf+m+fe+ed++++++sGt++gv+dl+p +W+nS+WrsL+ Bostr.1040s0052.1.p 217 VVHAFNNQCIFIVVYKPRS--SQFVVSYDKYVDAMNDNFNVGSRFRMRFEGEDFAKKSYSGTITGVNDLSP-HWKNSEWRSLQ 296 689***************6..9*************************************************.*********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 11.73 | 94 | 193 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.5E-9 | 98 | 193 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.1E-23 | 121 | 205 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 8.7E-16 | 124 | 192 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.7E-17 | 125 | 193 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.20E-14 | 128 | 191 | No hit | No description |
Pfam | PF06507 | 2.8E-29 | 217 | 296 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.2E-7 | 424 | 499 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 9.81E-12 | 459 | 539 | No hit | No description |
PROSITE profile | PS51745 | 20.189 | 463 | 541 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 564 aa Download sequence Send to blast |
MENNEEMNAQ PGLLGTIDRT KTYMYEQLWS ICAGPLCDLP KPGEKIYYFP QGHIELIETS 60 TREELDQIRP LFDLPSKLRC RVISVQLKAE KNTDEVYAQI SLMPDTTEVI IPITNEDNKK 120 PDMSQPSPTQ LVAKDLHGHE WRFKHTFRGT PRRHLFTSGW STFATKKRLI AGDTFVFVRG 180 ENGELRVGIR RAKHQLGHIP SSVISTQCMK HGLITSVVHA FNNQCIFIVV YKPRSSQFVV 240 SYDKYVDAMN DNFNVGSRFR MRFEGEDFAK KSYSGTITGV NDLSPHWKNS EWRSLQVSPW 300 EIEHLVSSSY ISQSTLLKKE RSRQLNEIGS PSSNLCTFQE IGQPSMSSSM SVPPFSYRDA 360 VEDSKFPSGW LMKDPVPAMP KSNYNNDQMV QPMKEKITTE ATTSCMLFGV DLATPSETKD 420 PLGPIESYHK SEISKLSQDK KLDHTQILTS PNEVQSTQFY STRSRTKVQM QGITIGRAVD 480 LNVLHGYDQL IVELEELFDL KGELRTRNQW ELVFKDNEGD IMLVGDDPWI EEVEKMKSRN 540 KFSQAKSTIS TSSNAEPNVK TDN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 3e-92 | 24 | 309 | 19 | 359 | Auxin response factor 1 |
4ldw_A | 3e-92 | 24 | 309 | 19 | 359 | Auxin response factor 1 |
4ldw_B | 3e-92 | 24 | 309 | 19 | 359 | Auxin response factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.1040s0052.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010478873.1 | 0.0 | PREDICTED: putative auxin response factor 14 isoform X1 | ||||
Swissprot | Q9FX25 | 0.0 | ARFM_ARATH; Auxin response factor 13 | ||||
TrEMBL | D7KJF3 | 0.0 | D7KJF3_ARALL; Auxin response factor | ||||
STRING | Bostr.1040s0052.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12276 | 7 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G35540.1 | 0.0 | auxin response factor 14 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.1040s0052.1.p |