PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.1040s0051.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | NAC | ||||||||
Protein Properties | Length: 574aa MW: 63991.4 Da PI: 5.0306 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 155.6 | 2.1e-48 | 17 | 143 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 +pGfrFhPtdeelvv+yLk+k+ g+kl++ ++i vd+ykv+P++Lp + +k+++++w+fF+ r++ky++ r++r t +gyWkatgkd Bostr.1040s0051.1.p 17 APGFRFHPTDEELVVYYLKRKICGRKLRI-NAIGVVDVYKVDPSELPglSILKTGDRQWFFFTLRNRKYPNAARSSRGTVTGYWKATGKD 105 69***************************.89***************644778899********************************** PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + + +++ vglkktLvfy+grap+ge+tdWvmhey++ Bostr.1040s0051.1.p 106 RIIEY-NSRSVGLKKTLVFYRGRAPNGERTDWVMHEYTM 143 *9999.999****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 52.311 | 16 | 166 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.57E-54 | 17 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.8E-25 | 18 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:1900057 | Biological Process | positive regulation of leaf senescence | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 574 aa Download sequence Send to blast |
MADSSPDSCF KGGKFSAPGF RFHPTDEELV VYYLKRKICG RKLRINAIGV VDVYKVDPSE 60 LPGLSILKTG DRQWFFFTLR NRKYPNAARS SRGTVTGYWK ATGKDRIIEY NSRSVGLKKT 120 LVFYRGRAPN GERTDWVMHE YTMDEEELGR CKNAKEYYAL YKLYKKSGAG PKNGEQYGAP 180 FQENEWVDSD SEDADNVAVP DDPVVRYGNS RHMDDTKFCN TVNVRLEDIE NLLNEIPDAP 240 GVTTRQFDEF AGVPQGNSAE EIQSTLLNNS SGEFLDPRKI GEFLPNGQPY NGHSSFQSHL 300 KSANSFEATS GMAPILDFEK DYIEMDDLLI PELGASSAEK SGQFLNHGEF GDVNEFDQLF 360 HDISMSLDVV DPVFQGTSIG LSSLSNFANN TSDQRQQFLY QQFQDQTLEN QQNNFMHPSK 420 TLNQFTDNMW FEDGQAALFD QPQSSSGVFA SHSTGVMPES MNPTMSVNSQ DKEGQNGGGT 480 KSQFSSALWE LLESIPSTPA SACEGPLNQT FVRMSSFSRI RFNGTSVTTN KLTVAKKRIS 540 NRGFLLLSVM GALCAIFWVF IATIGVIKRP VLS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-43 | 18 | 143 | 17 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcriptional activator that promotes leaf senescence by up-regulating senescence-associated genes in response to developmental and stress-induced senescence signals. Functions in salt and oxidative stress-responsive signaling pathways. Binds to the promoter of NAC029/NAP and NAC059/ORS1 genes (PubMed:23926065). {ECO:0000250|UniProtKB:Q949N0, ECO:0000269|PubMed:23926065}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00178 | DAP | Transfer from AT1G34180 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.1040s0051.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold, salt, drought stress and methyl methanesulfonate (MMS) treatment. {ECO:0000269|PubMed:17158162}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493493 | 0.0 | AB493493.1 Arabidopsis thaliana At1g34180 mRNA for hypothetical protein, partial cds, clone: RAAt1g34180. | |||
GenBank | AY084860 | 0.0 | AY084860.1 Arabidopsis thaliana clone 11977 mRNA, complete sequence. | |||
GenBank | BT030344 | 0.0 | BT030344.1 Arabidopsis thaliana At1g34180 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020868491.1 | 0.0 | NAC domain-containing protein 16 | ||||
Swissprot | A4FVP6 | 0.0 | NAC16_ARATH; NAC domain-containing protein 16 | ||||
TrEMBL | D7KJF4 | 0.0 | D7KJF4_ARALL; ANAC016 | ||||
STRING | Bostr.1040s0051.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2812 | 26 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34180.1 | 0.0 | NAC domain containing protein 16 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.1040s0051.1.p |
Publications ? help Back to Top | |||
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