PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.1040s0050.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | NAC | ||||||||
Protein Properties | Length: 560aa MW: 62842.9 Da PI: 4.7204 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 156.6 | 1e-48 | 17 | 143 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 +pGfrFhPtdeelv++yLk+k+ +k+l++ +vi vd+yk++P++Lp + ++k+++++w++F++r++ky++ r++r t++gyWkatgkd Bostr.1040s0050.1.p 17 APGFRFHPTDEELVMYYLKRKICRKRLRV-NVIGVVDVYKMDPEELPgQsMLKTGDRQWFYFTSRSRKYPNAARSSRGTETGYWKATGKD 105 69***************************.99**************96347888999********************************* PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + + +++ vglkktLvfy+grap+ge+tdWvmhey++ Bostr.1040s0050.1.p 106 RVIEY-NSRSVGLKKTLVFYRGRAPSGERTDWVMHEYTM 143 ***99.999****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 52.491 | 16 | 166 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.01E-54 | 17 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.8E-25 | 18 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0070301 | Biological Process | cellular response to hydrogen peroxide | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005789 | Cellular Component | endoplasmic reticulum membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 560 aa Download sequence Send to blast |
MADSSPDSCF KGGKFSAPGF RFHPTDEELV MYYLKRKICR KRLRVNVIGV VDVYKMDPEE 60 LPGQSMLKTG DRQWFYFTSR SRKYPNAARS SRGTETGYWK ATGKDRVIEY NSRSVGLKKT 120 LVFYRGRAPS GERTDWVMHE YTMDEDELGR CKNAQDYYAL YKLFKKSGAG PKNGEQYGAP 180 FQEEEWVDDG NEDDKTIAVP EQPVVRYEDT RRVDGRRLFN PVNPQLEDIN LLLNGIPDAP 240 GVPSRCIPQV NSEEELQSTL VNNSAREFLP NSQQYNRPPS LDSLETTEVT SAPKTSGIAP 300 LVFEEEDFIE MDDLLIHELG ASSTEKATQF SNHGEFSDFN EFDQLFHDVS MSLDMEPIDQ 360 GTSTNLSSLS NFANNTSDQR QQFLYQQLQD QTPENQLNNI MDPSTTLNQF TNDIWFQDDQ 420 AVLFDEQQSF SGAFASPSSG VMPNSTNPTM SVNAQDQERQ NGGGTTSQFS SALWALMDSI 480 PTTPASACEG PLNRTFVRMS SFSRIRFNGK ANGTPVTNTI AKKGIRNRGF LLLSIVGALC 540 AIFWVFIATV RVSGRTVFS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-43 | 18 | 143 | 17 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Transcriptional activator that acts as positive regulator of AOX1A during mitochondrial dysfunction. Binds directly to AOX1A promoter. Mediates mitochondrial retrograde signaling. {ECO:0000269|PubMed:24045017}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00179 | DAP | Transfer from AT1G34190 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.1040s0050.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold and drought stresses. {ECO:0000269|PubMed:17158162}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF361813 | 0.0 | AF361813.1 Arabidopsis thaliana F23M19.13/F23M19.13 mRNA, complete cds. | |||
GenBank | AY133552 | 0.0 | AY133552.1 Arabidopsis thaliana At1g34190/F23M19.13 mRNA, complete cds. | |||
GenBank | BT000730 | 0.0 | BT000730.1 Arabidopsis thaliana clone RAFL09-58-M22 (R18947) putative NAM (no apical meristem) protein (At1g34190) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020868493.1 | 0.0 | LOW QUALITY PROTEIN: NAC domain-containing protein 17 | ||||
Swissprot | Q9XIC5 | 0.0 | NAC17_ARATH; NAC domain-containing protein 17 | ||||
TrEMBL | R0IC91 | 0.0 | R0IC91_9BRAS; Uncharacterized protein | ||||
STRING | Bostr.1040s0050.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2812 | 26 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34190.1 | 0.0 | NAC domain containing protein 17 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.1040s0050.1.p |