PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.10273s0485.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family RAV
Protein Properties Length: 351aa    MW: 39434.9 Da    PI: 10.2929
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.10273s0485.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.82.7e-1363111155
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           s+ykGV   + +grW A+I++      ++r++lg+f   eeAa+ ++ a+++++g
  Bostr.10273s0485.1.p  63 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEQEEAARSYDIAARRFRG 111
                           89****9888.8*********3.....5*************************98 PP
2B3101.74e-32184282193
                           EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                           f+k+ tpsdv+k++rlv+pk++ae+h           ++++ + ++d +g++W+++++y+++s++yvltkGW++Fvk+++L++gD+v+F
  Bostr.10273s0485.1.p 184 FEKAVTPSDVGKLNRLVIPKQHAEKHfplpspsP-AVTKGVLINFKDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKKLRAGDVVTF 271
                           89*************************9988743.345999************************************************ PP

                           EE-SSSEE..E CS
                    B3  83 kldgrsefelv 93 
                           +++   +++l+
  Bostr.10273s0485.1.p 272 ERSTGLDRQLY 282
                           *7655555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.63E-1663119IPR016177DNA-binding domain
PfamPF008474.7E-863111IPR001471AP2/ERF domain
CDDcd000182.11E-2563118No hitNo description
Gene3DG3DSA:3.30.730.101.9E-2064119IPR001471AP2/ERF domain
PROSITE profilePS5103220.27164119IPR001471AP2/ERF domain
SMARTSM003804.4E-3064125IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.104.1E-41177289IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.19E-32181283IPR015300DNA-binding pseudobarrel domain
CDDcd100174.55E-29183274No hitNo description
PfamPF023622.2E-29184285IPR003340B3 DNA binding domain
SMARTSM010195.0E-27184289IPR003340B3 DNA binding domain
PROSITE profilePS5086314.057184289IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MGSSCIEEIS SSTSESFSTT TAKKLSLPPA AALRLYRMES GGSSVVLDSA NGVETESRKL  60
PSSKYKGVVP QPNGRWGAQI YEKHQRVWLG TFNEQEEAAR SYDIAARRFR GRDAVVNFKS  120
ILEDGDLAFL EAHTKAEIVD MLRKHTYADE LEQNNKRRLF LSVDVNGTRT TQNDNVLKTR  180
EVLFEKAVTP SDVGKLNRLV IPKQHAEKHF PLPSPSPAVT KGVLINFKDV NGKVWRFRYS  240
YWNSSQSYVL TKGWSRFVKE KKLRAGDVVT FERSTGLDRQ LYIDWKVRSG PRENPVQVVV  300
RLFGVDIFNV STGKPNDVVA VCGGKRSRDI DDMFALRLRC SKKQAIINAL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A6e-6118129011119DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences (Probable). Functionally redundant with TEM1. {ECO:0000250, ECO:0000269|PubMed:18718758, ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00025PBMTransfer from AT1G68840Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.10273s0485.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0138870.0AB013887.1 Arabidopsis thaliana mRNA for RAV2, complete cds.
GenBankAC0116650.0AC011665.8 Arabidopsis thaliana chromosome 1 BAC T6L1 genomic sequence, complete sequence.
GenBankAC0119140.0AC011914.9 Arabidopsis thaliana chromosome 1 BAC F14K14 genomic sequence, complete sequence.
GenBankAF3603120.0AF360312.1 Arabidopsis thaliana putative DNA-binding protein(RAV2 (At1g68840) mRNA, complete cds.
GenBankAY0563610.0AY056361.1 Arabidopsis thaliana putative DNA-binding protein RAV2 (At1g68840) mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001185352.10.0related to ABI3/VP1 2
RefseqNP_564947.10.0related to ABI3/VP1 2
SwissprotP822800.0RAV2_ARATH; AP2/ERF and B3 domain-containing transcription repressor RAV2
TrEMBLA0A178WNP00.0A0A178WNP0_ARATH; TEM2
STRINGBostr.10273s0485.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84827121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.20.0related to ABI3/VP1 2
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Marín-González E, et al.
    SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
    Plant Physiol., 2015. 169(2): p. 1214-24
    [PMID:26243615]
  3. Sun YW, et al.
    Attenuation of Histone Methyltransferase KRYPTONITE-mediated transcriptional gene silencing by Geminivirus.
    Sci Rep, 2015. 5: p. 16476
    [PMID:26602265]
  4. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  5. Matías-Hernández L, et al.
    TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
    Plant Physiol., 2016. 170(3): p. 1624-39
    [PMID:26802039]
  6. Li P, et al.
    The Arabidopsis UGT87A2, a stress-inducible family 1 glycosyltransferase, is involved in the plant adaptation to abiotic stresses.
    Physiol Plant, 2017. 159(4): p. 416-432
    [PMID:27747895]