PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.10273s0444.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

Nin-like

Protein Properties

Length: 526aa MW: 59248.2 Da PI: 4.516

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.10273s0444.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	79.7	3.2e-25	429	479	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 + +++l+d+s++F+ pi+ AAk++++c+TvLK+iCR+ G++RWPhRkiks+ Bostr.10273s0444.1.p 429 TGKLTLKDISMFFHFPIETAAKQMNLCPTVLKKICRKGGLMRWPHRKIKSV 479 5689*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.405	419	500	IPR003035	RWP-RK domain
Pfam	PF02042	1.5E-21	431	479	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 526 aa Download sequence Send to blast
MKITVKTLKE TRFEIEVKPN DSGIPVGNAN PLSMPQTQEP AAPLPQNQEH ADPLPQTQES 60 TATRPEPLFY HLPEGLRNTG SPVFLRDAEQ YQFLRPLVQS STLEDDEGED LYNYSFDGFG 120 RFTDEDLPDV MANPNPNLMD MSFLETSRPL VFPTLPMDVD ETKLLHELDL SITNYDTKDE 180 FDGLSFIDDE FTISCDMFEP SNDDINENIN NDVPEEIDND NGNNNVGETT RFEVSTRVIG 240 DANGPDFETG GTSTMHVLVP TMSDEMLVCT CCKMLRELVH IKEGEMNTLD IFGGIGFFCH 300 ATLLTQRFAS DYMECQPQTF HLKDLTMEEV KKFIEDYCSQ RVASGLSLVQ DTNAAFYQAM 360 SANSIFNQSP PMLTIPSRTD VPMSFVSPDE ALDVPPVLLH VGLREEPTNG VPKERERRKT 420 PLAAQRERTG KLTLKDISMF FHFPIETAAK QMNLCPTVLK KICRKGGLMR WPHRKIKSVQ 480 KKIASLESLL CTAKDGEVKA RAKMEIERLQ RQIDKICIDA LKNIK*

Sequence ? help Back to Top

Protein Sequence Length: 526 aa Download sequence Send to blast

MKITVKTLKE TRFEIEVKPN DSGIPVGNAN PLSMPQTQEP AAPLPQNQEH ADPLPQTQES  60
TATRPEPLFY HLPEGLRNTG SPVFLRDAEQ YQFLRPLVQS STLEDDEGED LYNYSFDGFG  120
RFTDEDLPDV MANPNPNLMD MSFLETSRPL VFPTLPMDVD ETKLLHELDL SITNYDTKDE  180
FDGLSFIDDE FTISCDMFEP SNDDINENIN NDVPEEIDND NGNNNVGETT RFEVSTRVIG  240
DANGPDFETG GTSTMHVLVP TMSDEMLVCT CCKMLRELVH IKEGEMNTLD IFGGIGFFCH  300
ATLLTQRFAS DYMECQPQTF HLKDLTMEEV KKFIEDYCSQ RVASGLSLVQ DTNAAFYQAM  360
SANSIFNQSP PMLTIPSRTD VPMSFVSPDE ALDVPPVLLH VGLREEPTNG VPKERERRKT  420
PLAAQRERTG KLTLKDISMF FHFPIETAAK QMNLCPTVLK KICRKGGLMR WPHRKIKSVQ  480
KKIASLESLL CTAKDGEVKA RAKMEIERLQ RQIDKICIDA LKNIK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.10273s0444.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010485077.1	0.0	PREDICTED: uncharacterized protein LOC104763398
TrEMBL	A0A178UGY4	0.0	A0A178UGY4_ARATH; Uncharacterized protein
STRING	Bostr.10273s0444.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4076	23	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	2e-13	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Bostr.10273s0444.1.p