PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.10273s0400.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

NAC

Protein Properties

Length: 375aa MW: 42420.4 Da PI: 7.1764

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.10273s0400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	126.1	2.8e-39	15	126	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 l pGfrFhPtdeelv++yLk+kve+++l++ + i+++diyk++PwdLp ++ky++++r+nr+t +g+Wkatg+d Bostr.10273s0400.1.p 15 LLPGFRFHPTDEELVSFYLKRKVEHRPLSI-KLITQLDIYKYDPWDLP----------------KRKYRNSTRPNRVTGAGFWKATGTD 86 579*************************.89**********9................478999*************** PP NAM 90 kevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++++ +++ +gl+k+Lv+y+g+a kg+ktdW+mhe+rl Bostr.10273s0400.1.p 87 RPIYTSdGNKCIGLRKSLVYYSGKAAKGSKTDWMMHEFRL 126 9956667*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.84E-47	11	153	IPR003441	NAC domain
PROSITE profile	PS51005	45.955	15	153	IPR003441	NAC domain
Pfam	PF02365	2.1E-21	17	126	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence Send to blast
MGEINEEAKK MEDVLLPGFR FHPTDEELVS FYLKRKVEHR PLSIKLITQL DIYKYDPWDL 60 PKRKYRNSTR PNRVTGAGFW KATGTDRPIY TSDGNKCIGL RKSLVYYSGK AAKGSKTDWM 120 MHEFRLPSTS SHTLGDTHVS SNDSWAICKI LKKTNTTALR AISHSYVSSF PQEARTDTKP 180 YENPSNNTIQ LSSDKILKNS FSFKYYNEDM SVAQTRSYLD NKEATKTSTC TNTNPFSYLD 240 FTSSDSPGPC LDQQYLRSLL LAPQETQPPR LPKFINNNII SSSDSSFMGE YTNQIGSNID 300 LTSAILAQEQ CPALVSLPQE YHHETGFEEN MMINANQDHS HALHHLPSTN VGDQNHQMLL 360 ESYYSSLSAS FSIN*

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence Send to blast

MGEINEEAKK MEDVLLPGFR FHPTDEELVS FYLKRKVEHR PLSIKLITQL DIYKYDPWDL  60
PKRKYRNSTR PNRVTGAGFW KATGTDRPIY TSDGNKCIGL RKSLVYYSGK AAKGSKTDWM  120
MHEFRLPSTS SHTLGDTHVS SNDSWAICKI LKKTNTTALR AISHSYVSSF PQEARTDTKP  180
YENPSNNTIQ LSSDKILKNS FSFKYYNEDM SVAQTRSYLD NKEATKTSTC TNTNPFSYLD  240
FTSSDSPGPC LDQQYLRSLL LAPQETQPPR LPKFINNNII SSSDSSFMGE YTNQIGSNID  300
LTSAILAQEQ CPALVSLPQE YHHETGFEEN MMINANQDHS HALHHLPSTN VGDQNHQMLL  360
ESYYSSLSAS FSIN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	4e-42	1	155	1	170	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.10273s0400.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189353	5e-70	AC189353.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB043L15, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019082649.1	0.0	PREDICTED: protein FEZ-like
Swissprot	Q9ZVH0	1e-136	FEZ_ARATH; Protein FEZ
TrEMBL	R0HW28	0.0	R0HW28_9BRAS; Uncharacterized protein
STRING	Bostr.10273s0400.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM306	28	200

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	1e-135	NAC family protein

Link Out ? help Back to Top
Phytozome	Bostr.10273s0400.1.p

Publications ? help Back to Top
Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]