PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.10273s0385.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 295aa MW: 33285.1 Da PI: 5.2159 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56 | 6.7e-18 | 85 | 138 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k Bostr.10273s0385.1.p 85 KKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 138 456899***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 131.7 | 2.7e-42 | 84 | 175 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 ekkrrl+ eqvk+LE++Fe +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy+aLkr++dalk+en+ L++++++L++ Bostr.10273s0385.1.p 84 EKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDALKRQFDALKAENDLLQTHNQKLQA 172 69**************************************************************************************9 PP HD-ZIP_I/II 90 elk 92 e++ Bostr.10273s0385.1.p 173 EIM 175 986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.37E-19 | 73 | 142 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.216 | 80 | 140 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.8E-17 | 83 | 144 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.31E-16 | 85 | 141 | No hit | No description |
Pfam | PF00046 | 3.0E-15 | 85 | 138 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.3E-19 | 87 | 148 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.2E-5 | 111 | 120 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 115 | 138 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.2E-5 | 120 | 136 | IPR000047 | Helix-turn-helix motif |
CDD | cd14686 | 0.00712 | 133 | 174 | No hit | No description |
Pfam | PF02183 | 9.9E-16 | 140 | 179 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009744 | Biological Process | response to sucrose | ||||
GO:0048826 | Biological Process | cotyledon morphogenesis | ||||
GO:0080022 | Biological Process | primary root development | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MSCNNGMSFF PSNFMIQTSY EDDHPHQSPS LAPLLPSCSL PQDLHGFASF LGKRSPMEGC 60 CDLEPGNNMN GEEDYSDDGS QMGEKKRRLN MEQVKTLEKN FELGNKLEPE RKMQLARALG 120 LQPRQIAIWF QNRRARWKTK QLEKDYDALK RQFDALKAEN DLLQTHNQKL QAEIMGLKCR 180 EQTESINLNK ETEGSCSNRS DNSSDNLRLD ISTAPPSIES TLTGGQPPPP QTLGRHFFPP 240 SPATATTTTT TMQFFQNSSS GQSMVKEENS ISNMFCAMDD HSGFWPWLDQ QQYN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 132 | 140 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00225 | DAP | Transfer from AT1G69780 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.10273s0385.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF208044 | 0.0 | AF208044.1 Arabidopsis thaliana homeodomain leucine-zipper protein ATHB13 mRNA, complete cds. | |||
GenBank | AY057572 | 0.0 | AY057572.1 Arabidopsis thaliana At1g69780/T6C23_2 mRNA, complete cds. | |||
GenBank | AY133645 | 0.0 | AY133645.1 Arabidopsis thaliana At1g69780/T6C23_2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_177136.1 | 0.0 | Homeobox-leucine zipper protein family | ||||
Swissprot | Q8LC03 | 0.0 | ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13 | ||||
TrEMBL | A0A178WPS4 | 0.0 | A0A178WPS4_ARATH; ATHB13 | ||||
STRING | Bostr.10273s0385.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2633 | 27 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69780.1 | 1e-172 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Bostr.10273s0385.1.p |
Publications ? help Back to Top | |||
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