PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.10273s0355.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family MYB_related
Protein Properties Length: 263aa    MW: 28579.7 Da    PI: 10.6694
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.10273s0355.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.91.3e-14104148347
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           +WT+eE+ l++ + ++ G+g+W+ I+r + k+Rt+ q+ s+ qky
  Bostr.10273s0355.1.p 104 PWTEEEHRLFLTGLHKVGKGDWRGISRNFVKTRTPTQVASHAQKY 148
                           8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501589.125519IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129419.27897153IPR017930Myb domain
SuperFamilySSF466896.63E-1799153IPR009057Homeodomain-like
TIGRFAMsTIGR015572.4E-16100151IPR006447Myb domain, plants
SMARTSM007172.3E-11101151IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-11103148IPR009057Homeodomain-like
PfamPF002497.1E-12104148IPR001005SANT/Myb domain
CDDcd001672.43E-10104149No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0046686Biological Processresponse to cadmium ion
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MSRSCSQCGN NGHNSRTCPT EINTTGDNIN DGGGGGGGEK GIMLFGVRVT EASSSSFRKS  60
VSMNNLSQFD HSPDPNPVED GGGYASDDVV HASGRNRERK RGTPWTEEEH RLFLTGLHKV  120
GKGDWRGISR NFVKTRTPTQ VASHAQKYFL RRTNQNRRRR RSSLFDITPH SFIGSPQEEN  180
QIQTPLEGIP LGSKLNRPVP IPIPIPPSRK MADLNLNKKT PAATVVFPSS SSSSNEQKTR  240
DRSRASGFEA MSSNGDSIMG VA*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor (PubMed:23888064, PubMed:24806884). Direct regulator of the transcription of peroxidase (Prxs) and reactive oxygen species (ROS)-related genes via the recognition of 5'-ATCACA-3' motif (PubMed:24806884). Binds to 5'-TATCCA-3' motif (TA box) and represses the activity of corresponding promoters (e.g. sugar response genes) (PubMed:25920996). Regulates hypocotyl elongation in response to darkness by enhancing auxin accumulation in a phytochrome-interacting factor (PIF) proteins-dependent manner. Promotes lateral roots formation (PubMed:23888064). Promotes cell expansion during leaves development via the modulation of cell wall-located Prxs (PubMed:24806884). Plays a critical role in developmentally regulated and dark-induced onset of leaf senescence by repressing the transcription of several genes involved in chloroplast function and responses to light and auxin. Promotes responses to auxin, abscisic acid (ABA), and ethylene (PubMed:25920996). {ECO:0000269|PubMed:23888064, ECO:0000269|PubMed:24806884, ECO:0000269|PubMed:25920996}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00630PBMTransfer from PK17526.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.10273s0355.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by CdCl(2) (PubMed:16463103). Accumulates in the dark (PubMed:23888064, PubMed:25920996). Diurnal expression pattern with maximal levels in the morning (at protein level). Specifically induced during leaf expansion (PubMed:24806884). Expressed in old and dark-treated leaves (PubMed:25920996). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:23888064, ECO:0000269|PubMed:24806884, ECO:0000269|PubMed:25920996}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2277111e-163AK227711.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-29-L19.
GenBankAY5195091e-163AY519509.1 Arabidopsis thaliana MYB transcription factor (At1g70000) mRNA, complete cds.
GenBankBT0064131e-163BT006413.1 Arabidopsis thaliana At1g70000 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010415672.11e-135PREDICTED: transcription factor MYB1R1
SwissprotQ9LVS02e-58KUA1_ARATH; Transcription factor KUA1
TrEMBLA0A178WHR61e-128A0A178WHR6_ARATH; Uncharacterized protein
TrEMBLO045441e-128O04544_ARATH; At1g70000
STRINGBostr.10273s0355.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM97912636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G70000.21e-124MYB_related family protein
Publications ? help Back to Top
  1. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]