PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.10273s0324.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

M-type_MADS

Protein Properties

Length: 261aa MW: 29884 Da PI: 5.1162

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.10273s0324.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	46.5	4.7e-15	6	46	3	43
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 ienk+ r +tf kR++g+ KK EL +LCd++++ +i+s+ Bostr.10273s0324.1.p 6 IENKTSRRTTFNKRKQGLKKKLTELVTLCDVKACGVIYSPY 46 9*************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	14.787	1	44	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.8E-12	1	55	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.57E-20	3	89	IPR002100	Transcription factor, MADS-box
CDD	cd00266	3.40E-26	4	80	No hit	No description
Pfam	PF00319	3.8E-16	6	46	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MRYSLIENKT SRRTTFNKRK QGLKKKLTEL VTLCDVKACG VIYSPYNPEP EAWPSREGVE 60 EVVSEFMEVS MKDRSKKMVD QETFLREMIA KEKAQLQKLR NENRKFQMQD IMWGCLKGEI 120 DVRKLGEKDL RDLSSFIDKY LNQLSCRIEN LTENGESSSS LPPLVVPDAL AKYQKQRKLF 180 QLQNDALLEF FGQIPKKIYD FNMNMNSNQN MILDLNQDLN VEEDGDIPSM DGSHHQPETD 240 CLAATAADAC APNITNNLES *

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the development of gametophytes and seeds.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.10273s0324.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by MEA in seeds, and by PKL after germination. {ECO:0000269\|PubMed:12815071, ECO:0000269\|PubMed:16359393}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020890945.1	1e-112	MADS-box transcription factor PHERES 2
Swissprot	Q7XJK8	1e-110	PHE2_ARATH; MADS-box transcription factor PHERES 2
TrEMBL	S6BIJ3	1e-108	S6BIJ3_TURGL; Pheres1 (Fragment)
STRING	Bostr.10273s0324.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM70	28	415

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65300.1	8e-89	AGAMOUS-like 38

Link Out ? help Back to Top
Phytozome	Bostr.10273s0324.1.p

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]