PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.10273s0307.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | TALE | ||||||||
Protein Properties | Length: 318aa MW: 36264.8 Da PI: 4.7651 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.4 | 2.7e-09 | 262 | 294 | 23 | 55 |
SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 23 rypsaeereeLAkklgLterqVkvWFqNrRake 55 +yp+++++ LA+++gL+++q+ +WF N+R ++ Bostr.10273s0307.1.p 262 PYPTESDKIALAEETGLDQKQINNWFINQRKRH 294 8*****************************885 PP | |||||||
2 | ELK | 33.7 | 8.2e-12 | 214 | 235 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 +LK+qLlrK++++++sLk EFs Bostr.10273s0307.1.p 214 DLKDQLLRKFGSHISSLKLEFS 235 6********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 2.5E-20 | 72 | 116 | IPR005540 | KNOX1 |
Pfam | PF03790 | 7.6E-20 | 74 | 115 | IPR005540 | KNOX1 |
SMART | SM01256 | 4.2E-28 | 124 | 175 | IPR005541 | KNOX2 |
Pfam | PF03791 | 9.9E-26 | 128 | 174 | IPR005541 | KNOX2 |
PROSITE profile | PS51213 | 9.935 | 214 | 234 | IPR005539 | ELK domain |
SMART | SM01188 | 4.2E-6 | 214 | 235 | IPR005539 | ELK domain |
Pfam | PF03789 | 7.4E-9 | 214 | 235 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.519 | 234 | 297 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.9E-12 | 236 | 301 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.15E-18 | 236 | 307 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 7.40E-13 | 237 | 298 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.3E-27 | 239 | 298 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 3.7E-17 | 254 | 293 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 272 | 295 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009736 | Biological Process | cytokinin-activated signaling pathway | ||||
GO:0010094 | Biological Process | specification of carpel identity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MDRMCGFRSA VDYSEKAALM MMPSDHQSLL CSSAGDDNRV FGSDELATAV SWETTPSIAP 60 RIRKAEDNFS LGVIKSKIAC HPLYPRLLKT YIDCQKVGAP MEIACILEEI QRENDVYKKR 120 DVNPMSCFGD DPELDEFMET YCDILVKYKS DLARPFDEAT TFLNKIETQL QNLCTGPASV 180 TGLSDDGAVS SDEELREDDD VAAHESQQRS NDRDLKDQLL RKFGSHISSL KLEFSRKKKK 240 GKLPRGARQA LLDWWNLHYT WPYPTESDKI ALAEETGLDQ KQINNWFINQ RKRHWKPSEN 300 MPFAMMDDSS ETFFTEE* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a role in meristem function, and may be involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.10273s0307.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010471046.1 | 0.0 | PREDICTED: homeobox protein knotted-1-like 2 | ||||
Swissprot | P46640 | 0.0 | KNAT2_ARATH; Homeobox protein knotted-1-like 2 | ||||
TrEMBL | R0GFW0 | 0.0 | R0GFW0_9BRAS; Uncharacterized protein | ||||
STRING | Bostr.10273s0307.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM835 | 27 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G70510.1 | 0.0 | KNOTTED-like from Arabidopsis thaliana 2 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.10273s0307.1.p |