PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.10273s0259.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 205aa MW: 23117 Da PI: 8.9952 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.5 | 5.5e-19 | 65 | 120 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rrk+ ++tkeq + Lee F +n++++ +++++LA+ l+L++rqV vWFqNrRa+ k Bostr.10273s0259.1.p 65 RRKKLRLTKEQSHLLEESFIQNHTLTLKQKKDLATFLKLSQRQVEVWFQNRRARSK 120 79999*************************************************98 PP | |||||||
2 | HD-ZIP_I/II | 105.3 | 4.7e-34 | 66 | 154 | 1 | 90 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rl+keq++lLEesF ++++L+ ++K++la+ L+l++rqv+vWFqnrRAR k+k++E+++e+Lkr++ +lke+n+rL+ eveeLr Bostr.10273s0259.1.p 66 RKKLRLTKEQSHLLEESFIQNHTLTLKQKKDLATFLKLSQRQVEVWFQNRRARSKLKHTEMECEYLKRWFGSLKEQNRRLQIEVEELR- 153 69*************************************************************************************9. PP HD-ZIP_I/II 90 e 90 + Bostr.10273s0259.1.p 154 A 154 4 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.1E-18 | 45 | 120 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.01E-19 | 52 | 121 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.75 | 62 | 122 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.1E-16 | 64 | 126 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.8E-16 | 65 | 120 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.88E-15 | 65 | 123 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 97 | 120 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 2.9E-16 | 122 | 165 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 2.9E-9 | 122 | 156 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MAISPNSSSL ELTISIPSFS PSPSPGDHHG MRDFDINQTP KTEEDHMIGA TQHVNEEDSN 60 SAGRRRKKLR LTKEQSHLLE ESFIQNHTLT LKQKKDLATF LKLSQRQVEV WFQNRRARSK 120 LKHTEMECEY LKRWFGSLKE QNRRLQIEVE ELRALKPSST SALTMCPRCE RVTGAADSDS 180 NAVQEGAALS SRSRMTISSS SSLC* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 62 | 70 | GRRRKKLRL |
2 | 63 | 69 | RRRKKLR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00226 | DAP | Transfer from AT1G70920 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.10273s0259.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK175837 | 0.0 | AK175837.1 Arabidopsis thaliana mRNA, complete cds, clone: RAFL22-44-P21. | |||
GenBank | AK175965 | 0.0 | AK175965.1 Arabidopsis thaliana mRNA, complete cds, clone: RAFL22-65-O17. | |||
GenBank | EU339186 | 0.0 | EU339186.1 Arabidopsis thaliana HD-ZIP transcription factor 18 (ATHB18) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010415789.1 | 1e-119 | PREDICTED: homeobox-leucine zipper protein ATHB-X isoform X2 | ||||
Swissprot | Q8GXM7 | 1e-118 | ATHBX_ARATH; Homeobox-leucine zipper protein ATHB-X | ||||
TrEMBL | A9Z1E8 | 1e-116 | A9Z1E8_ARATH; HD-ZIP transcription factor 18 | ||||
STRING | Bostr.10273s0259.1.p | 1e-150 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13380 | 16 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G70920.1 | 1e-119 | homeobox-leucine zipper protein 18 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.10273s0259.1.p |
Publications ? help Back to Top | |||
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