PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.10273s0203.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | ERF | ||||||||
Protein Properties | Length: 185aa MW: 20221.4 Da PI: 6.2349 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.5 | 2.5e-16 | 24 | 73 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr +k +g+Wv+eIr+p + + r++lg+f t+e Aa a++ a+ ++g Bostr.10273s0203.1.p 24 AYRGVRKRK-WGKWVSEIREPGT---KNRIWLGSFETPEIAATAYDVAAFHFRG 73 69****999.**********833...59*********************99988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.94E-30 | 23 | 83 | No hit | No description |
SuperFamily | SSF54171 | 1.24E-21 | 23 | 82 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.459 | 24 | 81 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.3E-9 | 24 | 73 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.1E-31 | 24 | 82 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.7E-36 | 24 | 87 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.1E-13 | 25 | 36 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.1E-13 | 63 | 83 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MAGHGNSSNS DKAHNDGQAG IPSAYRGVRK RKWGKWVSEI REPGTKNRIW LGSFETPEIA 60 ATAYDVAAFH FRGREARLNF PELASTLPRP ADSSSDSIRM AAHEATLCHR TQAVDSAMQV 120 DSSSSSAVSP MMVRLSPREI QAINESTLGS PTMWMHSTDD CMGFANDVGM NVWDTYQSDS 180 LWDP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-17 | 25 | 81 | 6 | 63 | ATERF1 |
3gcc_A | 5e-17 | 25 | 81 | 6 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00227 | DAP | Transfer from AT1G71450 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.10273s0203.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC016162 | 1e-170 | AC016162.5 Arabidopsis thaliana chromosome 1 BAC F3I17 genomic sequence, complete sequence. | |||
GenBank | AC016163 | 1e-170 | AC016163.6 Arabidopsis thaliana chromosome 1 BAC F26A9 genomic sequence, complete sequence. | |||
GenBank | BT010764 | 1e-170 | BT010764.1 Arabidopsis thaliana At1g71450 gene, complete cds. | |||
GenBank | BT011790 | 1e-170 | BT011790.1 Arabidopsis thaliana At1g71450 mRNA, complete cds. | |||
GenBank | CP002684 | 1e-170 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006301876.1 | 1e-120 | ethylene-responsive transcription factor ERF021 | ||||
Swissprot | Q9C9I2 | 1e-111 | ERF21_ARATH; Ethylene-responsive transcription factor ERF021 | ||||
TrEMBL | R0HY23 | 1e-118 | R0HY23_9BRAS; Uncharacterized protein | ||||
STRING | Bostr.10273s0203.1.p | 1e-135 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71450.1 | 1e-100 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Bostr.10273s0203.1.p |