PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.10273s0093.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family AP2
Protein Properties Length: 421aa    MW: 47628.3 Da    PI: 6.8288
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.10273s0093.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2409.6e-13230286155
                   AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ngkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           s+y+GV++++++gr++A+++d  ++  g++ k  + g ++ +e+Aa+a++ a++k++g
  Bostr.10273s0093.1.p 230 SQYRGVTRHRWTGRYEAHLWDnSCKrEGQTrKGRQ-GGYDDEEKAARAYDLAALKYWG 286
                           78*******************88885444436666.557777**************98 PP
2AP247.64.1e-15329380155
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Bostr.10273s0093.1.p 329 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 380
                           57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.80E-19230296No hitNo description
SuperFamilySSF541712.29E-15230296IPR016177DNA-binding domain
PfamPF008478.5E-9230286IPR001471AP2/ERF domain
PROSITE profilePS5103217.556231294IPR001471AP2/ERF domain
SMARTSM003803.5E-23231300IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.1E-13231295IPR001471AP2/ERF domain
PRINTSPR003672.8E-6232243IPR001471AP2/ERF domain
CDDcd000184.57E-25329390No hitNo description
SuperFamilySSF541716.47E-18329389IPR016177DNA-binding domain
PfamPF008475.0E-10329380IPR001471AP2/ERF domain
SMARTSM003801.5E-33330394IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-18330388IPR001471AP2/ERF domain
PROSITE profilePS5103219.045330388IPR001471AP2/ERF domain
PRINTSPR003672.8E-6370390IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MNKWLGFSLT PHLRISDREE EEEKDEEELR HDGSGGSLFF ADPLTHHPSV GRYDINLDHH  60
HHHDEEVPNS HQTEYPMNHN QTNISCTTVI NRLYPPGYLL HEQTVVTPQY PNLNPNLSHD  120
YGAFERVGSI SDFKSWLRQG TPTFPLSSTY VTEEGGTSNN ISHLSNEETG YNTNGSMLSL  180
ALSHGACSDL INESNVPVKV DEKRKRLDGK SLVEESVPRK SVDSFGQRTS QYRGVTRHRW  240
TGRYEAHLWD NSCKREGQTR KGRQGGYDDE EKAARAYDLA ALKYWGPTTH LNFPLSNYEK  300
EIEELNNMNR QEFVAMLRRN SSGFSRGASI YRGVTRHHQH GRWQARIGRV AGNKDLYLGT  360
FSTQEEAAEA YDIAAIKFRG LNAVTNFDIN RYDVKRICSS SAIVNSDQAK HSPTSSATGQ  420
*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.10273s0093.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4464220.0DQ446422.1 Arabidopsis thaliana clone pENTR221-At1g72570 ovule development protein (At1g72570) mRNA, complete cds.
GenBankDQ6529300.0DQ652930.1 Arabidopsis thaliana clone 0000013270_0000009577 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010428147.20.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ1PFE10.0AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A178WFN20.0A0A178WFN2_ARATH; Uncharacterized protein
STRINGBostr.10273s0093.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM117472532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.10.0AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]