PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.10273s0086.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family MYB_related
Protein Properties Length: 675aa    MW: 75039.8 Da    PI: 5.1757
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.10273s0086.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.12.3e-09578626348
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                           +WT  E  +lv++v ++G g W+ I ++       Rt  ++k++w+++l
  Bostr.10273s0086.1.p 578 AWTLSEVTKLVEGVSKYGAGKWSEIKKHSFssySYRTSVDLKDKWRNLL 626
                           7****************************99**99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.069571630IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-14573632IPR009057Homeodomain-like
SMARTSM007173.3E-10575628IPR001005SANT/Myb domain
SuperFamilySSF466892.24E-16577636IPR009057Homeodomain-like
CDDcd116604.10E-21577627No hitNo description
PfamPF002493.0E-7578626IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 675 aa     Download sequence    Send to blast
MGTVVGTVED CREMFEGSAQ TRITPFSSTN EIGNPVAYKL VRVSGDGRLV PATDEEILEV  60
NETDMHIASD PCQTVGYLAT DEEILEVNET NMHIASDACQ TVGYLATDEE ILEVNETNMH  120
IASDACQTVG YLPAEGIPSR LSLLESSEGL LQSDNVRPYT DQVKFRPEYN EEMLQKVEQE  180
ERLGNVHGSQ MPSTPPDANI QCCNENNFIE EDQVHHEALL QEPNSFSSNV QNECSMTQSD  240
KIEPCSNAAA SPKETALSVA AQKPDFSRVR GEICLDNLPI KALQETFRAT FGRETTVKDK  300
MWLKRRIAMG LINSCDVPTT NLTIKDNKLV GNQEKSNDMT NVVSKDMGDE VRATKPKDAP  360
SSTDHVNTSD HVLGGNHYYA SEDYSSEQRA AKRVRKPTRR YIEELSETDE KQQNDKSMIP  420
SKDQKLSEKP EVRSISVSSG KRVAVTRMVS LAGSEIEVPY VSHVRRSRPR ENIMALMDCH  480
SICLEDRASP AESNFNLSPS QLNNEVVKRF SVVKSASLPV QKEFATSHKN NEEHILSEVD  540
QDMEPEHIDS SGNSSDDNNN IGMPIMQGGA LRRKHHRAWT LSEVTKLVEG VSKYGAGKWS  600
EIKKHSFSSY SYRTSVDLKD KWRNLLKASF AQSPSNSMGS LKKHGSMQIP MQILLRVREL  660
RGEAISGSTG KQGW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.10273s0086.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0456280.0AY045628.1 Arabidopsis thaliana At1g72650/F28P22_16 mRNA, complete cds.
GenBankAY0845300.0AY084530.1 Arabidopsis thaliana clone 110945 mRNA, complete sequence.
GenBankAY1248680.0AY124868.1 Arabidopsis thaliana At1g72650/F28P22_16 mRNA, complete cds.
GenBankAY5195400.0AY519540.1 Arabidopsis thaliana MYB transcription factor (At1g72650) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006300624.10.0uncharacterized protein LOC17894921 isoform X2
TrEMBLR0GCR00.0R0GCR0_9BRAS; Uncharacterized protein
STRINGBostr.10273s0086.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43642649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.20.0TRF-like 6