PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.10273s0077.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family MYB_related
Protein Properties Length: 291aa    MW: 31838.3 Da    PI: 8.4784
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.10273s0077.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.52.3e-11556147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                          +++WT eE+e l+ +++++G+g Wk I r         +R+  ++k++w+++
  Bostr.10273s0077.1.p  5 KLKWTGEEEEALLAGIAKHGPGKWKNILRDPDfadqlINRSNIDLKDKWRNL 56
                          689*********************************999***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.167162IPR017930Myb domain
SuperFamilySSF466891.29E-15366IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-13456IPR009057Homeodomain-like
SMARTSM007179.1E-8459IPR001005SANT/Myb domain
PfamPF002499.6E-8556IPR001005SANT/Myb domain
CDDcd116607.43E-21756No hitNo description
SuperFamilySSF467855.44E-14125208IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005263.0E-15126191IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.101.1E-9127208IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150421.296128196IPR005818Linker histone H1/H5, domain H15
PfamPF005384.3E-7130189IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MGNQKLKWTG EEEEALLAGI AKHGPGKWKN ILRDPDFADQ LINRSNIDLK DKWRNLSVPP  60
GTQGSNNKVR PTKVKEEGVT PPAVAIGGTS TPPPIAYTTI SVAPSLQRIA SSELITDESC  120
NIVVDTKNAP RYDGMIFEAL SALADANGSD VSSIFHFIEP RHEVPPNFRR ILSSRLRRLA  180
AQSKLEKLQN FYKIPDPSGT RTPAPKPKET HMKPRQLNNQ ASAVSQQMIE EAAITAACKV  240
IEAENKIDVA KVAGEEFEKM TKLAKGTEHL LVIANEIHEQ CSRGEVVHLA *
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00231DAPTransfer from AT1G72740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.10273s0077.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3729251e-113AF372925.1 Arabidopsis thaliana At1g72740/F28P22_7 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010428173.11e-168PREDICTED: telomere repeat-binding factor 5-like isoform X2
SwissprotF4IEY41e-145TRB5_ARATH; Telomere repeat-binding factor 5
TrEMBLR0IFA61e-163R0IFA6_9BRAS; Uncharacterized protein (Fragment)
STRINGBostr.10273s0077.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23212875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.21e-133MYB_related family protein
Publications ? help Back to Top
  1. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]