PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.10273s0069.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family NF-YA
Protein Properties Length: 340aa    MW: 37593.6 Da    PI: 9.7013
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.10273s0069.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.21.1e-32177233158
             CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                           +ep++VNaKQy++I++RRq+Rakle+++kl +k+rkpylheSRh hAl+RpRgsgGrF
  Bostr.10273s0069.1.p 177 NEPVFVNAKQYHAIMRRRQQRAKLEAQNKL-IKARKPYLHESRHVHALKRPRGSGGRF 233
                           59****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.7E-38175236IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.735176236IPR001289Nuclear transcription factor Y subunit A
PfamPF020456.3E-27178233IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006168.9E-24179201IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860181201IPR018362CCAAT-binding factor, conserved site
PRINTSPR006168.9E-24210233IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MMHQMNKKDS ATHSTLPYLN TSISWGMVPT DSIVNRRGSA ESLSLKVDAR PDHIQTTKQI  60
SFQDQDSSST QSTGQSYTEV ANSGDDNPSR QISFSAKSGS EETEQKGFAT NPKSGSMTGF  120
PNIHFAPAQP NFSFHYADPH FGGLLAASYL PHASTCNPQM VGTVHGRVPL PGELTENEPV  180
FVNAKQYHAI MRRRQQRAKL EAQNKLIKAR KPYLHESRHV HALKRPRGSG GRFLNTKKLP  240
QEFEQAASRE QENDKSGQRD NKKANMSRFE SHMLHNSKDR SSTTSGSDIT SVSDSADIFG  300
HTEFQFSGFP TLTNRAMLVH GQSNDMHGGG DMHHFSVHI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A6e-20177237262NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.10273s0069.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1400280.0AY140028.1 Arabidopsis thaliana CCAAT-binding factor B subunit-like protein, putative (At1g72830) mRNA, complete cds.
GenBankBT0088250.0BT008825.1 Arabidopsis thaliana At1g72830 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006300533.10.0nuclear transcription factor Y subunit A-3
SwissprotQ93ZH20.0NFYA3_ARATH; Nuclear transcription factor Y subunit A-3
TrEMBLR0GCV40.0R0GCV4_9BRAS; Uncharacterized protein
STRINGBostr.10273s0069.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33492762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.10.0nuclear factor Y, subunit A3