PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.10064s0058.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family bHLH
Protein Properties Length: 539aa    MW: 61399.4 Da    PI: 6.8291
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.10064s0058.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.53.8e-063583951355
                           HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                           R++ N++f+ Lr+++P+ +       ++K +iL  +++Y+++L+
  Bostr.10064s0058.1.p 358 RRKENEKFSVLRTMVPTvN------EVDKESILNNTIKYLQELE 395
                           6777*************65......8***************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.2E-5023217IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088811.153345394IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-8351400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-9358405IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.16E-9358409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.00E-5358399No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048629Biological Processtrichome patterning
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MSLTMADGVE ATGGRSKRQN SLLRKQLALA VRSVQWSYAI FWSSSLTQPG VLEWGEGCYN  60
GDMKKRKKSY ESHYKYGLQR SKQLRKLYLS MLEEDSGTTV STTHDAHNDD DHHNCDNTNM  120
MLSPDDLSDE EWYYLVSMSY VFSPSQCLPG RASATGETIW LCNAQYAENK LFSRSLLARS  180
ASIQTVVCFP YLGGVIELGV TELISEDHSL LQHVKSCLLE ISLHRNNDDE KKRGIMISEG  240
TLMLEEKHQI PLGIPDEDLH YKRTISTVLN YSADRSSRNY KTIHHRQPNL VSSDSGSSFL  300
RWKQCEQPNS GFVQKQSDLL PQSQNVLRKM LYNVPLMHIK RMFPSQISGL NQDDPSDRRK  360
ENEKFSVLRT MVPTVNEVDK ESILNNTIKY LQELEARVEE LESCMGSVNF VERQRQTTKN  420
LNDSVLIEET SGNYDDSTNI DENSGETEKA TVLRDKTHLR VKLKETEVAI EVRCSYRDYI  480
VADIMETLSN LHMDAFSVRS HTLNKFLTLN LKAKFRGAAV ASVGMIKREL RRVIGDLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A3e-12232189192Transcription factor MYC3
4rqw_B3e-12232189192Transcription factor MYC3
4rs9_A3e-12232189192Transcription factor MYC3
4yz6_A3e-12232189192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16367KKRKK
Functional Description ? help Back to Top
Source Description
UniProtTrancsription activator, when associated with MYB75/PAP1 or MYB90/PAP2. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.10064s0058.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4936640.0AB493664.1 Arabidopsis thaliana At4g00480 mRNA for hypothetical protein, partial cds, clone: RAAt4g00480.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010427067.10.0PREDICTED: transcription factor MYC1-like
SwissprotQ8W2F10.0BH012_ARATH; Transcription factor MYC1
TrEMBLR0FDM90.0R0FDM9_9BRAS; Uncharacterized protein
STRINGBostr.10064s0058.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM117701832
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00480.10.0bHLH family protein