PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.10064s0009.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | MYB_related | ||||||||
Protein Properties | Length: 307aa MW: 34262.9 Da PI: 9.8616 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45 | 2.4e-14 | 60 | 104 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT++E++++++a +++ + Wk+I + +g +t q++s+ qky Bostr.10064s0009.1.p 60 RENWTEQEHDKFLEALHLFDRD-WKKIEAFVG-SKTVVQIRSHAQKY 104 789*****************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.97E-17 | 54 | 110 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.6 | 55 | 109 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.4E-7 | 57 | 110 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 8.7E-18 | 58 | 107 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.3E-11 | 59 | 107 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-12 | 60 | 104 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.43E-9 | 62 | 105 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MVSVNPRPKG FPFFDPVNMS LPGSSDGFGS IPITGRTSTV SFSEDSMKKI RKPYTIKKSR 60 ENWTEQEHDK FLEALHLFDR DWKKIEAFVG SKTVVQIRSH AQKYFLKVQK SGTNEHLPPP 120 RPKRKASHPY PQKAPKNVAF TSHVIGSLPS SSTPLLEPGY LYSSDSQSLL GNQAVCSSSS 180 SSWNHESTNL PKPVIEEEPG VSATALPKNI CSKEDTQRVR VLAKPSEEES CEKPHRVMPN 240 FAEVYSFIGS VFDPNTSGHL QRLKQMDPIN METVLLLMRN LSVNLTSPEF AEQRRLISSY 300 SSKALK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00423 | DAP | Transfer from AT4G01280 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.10064s0009.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ937212 | 0.0 | AJ937212.1 Arabidopsis thaliana mRNA for myb transcription factor LHY-CCA1-like4 (lcl4 gene). | |||
GenBank | BT024711 | 0.0 | BT024711.1 Arabidopsis thaliana At4g01280 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023636724.1 | 0.0 | protein REVEILLE 5 isoform X2 | ||||
Swissprot | C0SVG5 | 0.0 | RVE5_ARATH; Protein REVEILLE 5 | ||||
TrEMBL | R0H856 | 0.0 | R0H856_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | Bostr.10064s0009.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1290 | 28 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01280.1 | 0.0 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Bostr.10064s0009.1.p |
Publications ? help Back to Top | |||
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