PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.10058s0024.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | ZF-HD | ||||||||
Protein Properties | Length: 325aa MW: 35206.8 Da PI: 8.2219 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 107.5 | 7.9e-34 | 48 | 105 | 4 | 60 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreveee 60 ++YkeClkNhAa+lGgha+DGCgEfmps+++ +++++lkCaACgCHRnFHRr++e++ Bostr.10058s0024.1.p 48 FTYKECLKNHAAALGGHALDGCGEFMPSPSSIsSDPTSLKCAACGCHRNFHRRDPENN 105 68**************************9999899******************99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 3.0E-10 | 45 | 101 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 6.2E-28 | 49 | 102 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.7E-31 | 49 | 101 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.629 | 50 | 101 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 1.67E-18 | 180 | 254 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.4E-29 | 183 | 254 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 2.7E-25 | 193 | 250 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
MTPTTITTTT PTPKSPEPES ETPTRIQPAK PISFSNGIIK RHHHPLLFTY KECLKNHAAA 60 LGGHALDGCG EFMPSPSSIS SDPTSLKCAA CGCHRNFHRR DPENNNDSSP IPPPPPSTAV 120 EYQPHHRHHP PPPPPPPPPP PPRSPNSASP PPISSSYMLL SLSGTNNNNN LASFSDLDFS 180 GGNHHQHNLH GSRKRFRTKF SQFQKEKMHE FAERVGWKMQ KHDEDDVREF CRQIGVDKSV 240 LKVWMHNNKN TFNRRDLSGT EIRKIDNGGG NHAPVLAGEI NTNNNGHHGG GGELHHSVSS 300 GGGGEFDNDT GGVHGGNVNG SSSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 8e-22 | 192 | 251 | 16 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. Probably involved in establishing polarity during leaf development through the gibberellic acid (GA) signaling pathway. {ECO:0000269|PubMed:17387478}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00536 | DAP | Transfer from AT5G39760 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.10058s0024.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By gibberellic acid (GA). {ECO:0000269|PubMed:17387478}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB016876 | 0.0 | AB016876.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MKM21. | |||
GenBank | AK228484 | 0.0 | AK228484.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL15-09-C01. | |||
GenBank | AY091034 | 0.0 | AY091034.1 Arabidopsis thaliana unknown protein (At5g39760) mRNA, complete cds. | |||
GenBank | AY117347 | 0.0 | AY117347.1 Arabidopsis thaliana unknown protein (At5g39760) mRNA, complete cds. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020872961.1 | 1e-123 | zinc-finger homeodomain protein 10 | ||||
Swissprot | Q9FIW9 | 1e-123 | ZHD10_ARATH; Zinc-finger homeodomain protein 10 | ||||
TrEMBL | D7MJI5 | 1e-121 | D7MJI5_ARALL; Uncharacterized protein | ||||
STRING | Bostr.10058s0024.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2220 | 25 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39760.1 | 1e-82 | homeobox protein 23 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.10058s0024.1.p |
Publications ? help Back to Top | |||
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