PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.10058s0014.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 228aa MW: 26229.9 Da PI: 10.1521 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 77.8 | 8.1e-25 | 5 | 54 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +++++s +++++s+R+++++KKAeELS+LCd+ev vi+++++g+l+++++ Bostr.10058s0014.1.p 5 PSSSYSLASTSLSNRLKTVFKKAEELSILCDIEVGVIYYGPDGELKTWPK 54 689*********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 8.4E-4 | 6 | 55 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.4E-14 | 13 | 52 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 11.241 | 14 | 56 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.09E-15 | 14 | 88 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MRSSPSSSYS LASTSLSNRL KTVFKKAEEL SILCDIEVGV IYYGPDGELK TWPKEKEKVK 60 DMALRYSQLT EALRRKKSVN LYGFLNKKKI KDLKNLNKER KTMLKKVNGL KYPISDHYSS 120 DQVSQLIQSL ELNFSKFQER LRFVESQKHK ETKLDHQSLA SSSLNHQQHQ HLQTQSLNPS 180 QFSLIMYNHG DNTFSQIPLS ASNFNQDFSA LLQESELKNH LMKQNLS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.10058s0014.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002870726.2 | 1e-113 | agamous-like MADS-box protein AGL75 | ||||
Swissprot | Q9FIX0 | 1e-104 | AGL81_ARATH; Agamous-like MADS-box protein AGL81 | ||||
TrEMBL | D7MJC3 | 1e-113 | D7MJC3_ARALL; Uncharacterized protein (Fragment) | ||||
STRING | Bostr.10058s0014.1.p | 1e-164 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM566 | 20 | 126 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41200.1 | 2e-87 | AGAMOUS-like 75 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.10058s0014.1.p |
Publications ? help Back to Top | |||
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