PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.10058s0013.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family NAC
Protein Properties Length: 342aa    MW: 38831.4 Da    PI: 8.6546
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.10058s0013.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.68.5e-52211472128
                   NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                            pGfrFhPtdeelv++yLk+kv +k+l++ e ik+vdiyk++PwdLpk ++ +ekewyf+++rd+ky++++r+nr+t  g+Wkatg+d+
  Bostr.10058s0013.1.p  21 LPGFRFHPTDEELVSFYLKRKVLHKSLPF-ELIKKVDIYKYDPWDLPKLAAMGEKEWYFYCPRDRKYRNSTRPNRVTGGGFWKATGTDR 108
                           69**************************9.89***************8778899*********************************** PP

                   NAM  91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           +++s  +++ +glkk+Lvfy+gra kg ktdW+mhe+rl
  Bostr.10058s0013.1.p 109 PIYSLdSTRCIGLKKSLVFYRGRAAKGIKTDWMMHEFRL 147
                           ***9856677***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.15E-5719191IPR003441NAC domain
PROSITE profilePS5100555.9320191IPR003441NAC domain
PfamPF023652.4E-2522147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MVLVMDYEES NSVERYDDVV LPGFRFHPTD EELVSFYLKR KVLHKSLPFE LIKKVDIYKY  60
DPWDLPKLAA MGEKEWYFYC PRDRKYRNST RPNRVTGGGF WKATGTDRPI YSLDSTRCIG  120
LKKSLVFYRG RAAKGIKTDW MMHEFRLPSI SDSHHSTYPN YNNKKQNLNN NNSSKEIPSS  180
DAWAICRIFK KTNAVSSQRS IPQSWVYPTI PDTTNQYNSQ SHNTTTLLAS SDVLSHIATR  240
QNLISSPVNE PTTSFTESAA AYFASQMLGV PYNTARNSGT GDALFLRNSE TGDALFLTNN  300
ENSYFNNLTG ALTHELPNVR SMVMEETTVS EMSATSYSTN N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-522219317170Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00537DAPTransfer from AT5G39820Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.10058s0013.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0168761e-169AB016876.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MKM21.
GenBankCP0026881e-169CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006285478.10.0putative NAC domain-containing protein 94
SwissprotQ9FIW50.0NAC94_ARATH; Putative NAC domain-containing protein 94
TrEMBLR0F9M70.0R0F9M7_9BRAS; Uncharacterized protein
STRINGBostr.10058s0013.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30628200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39820.10.0NAC domain containing protein 94