PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.10040s0246.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family M-type_MADS
Protein Properties Length: 279aa    MW: 30742.4 Da    PI: 7.134
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.10040s0246.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF30.73.9e-101461450
                          -SHHHHHHHHHHHH.HHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                SRF-TF  4 enksnrqvtfskRr.ngilKKAeELSvLCdaevaviifsstgklyeys 50
                          +++ +r+  f kR+  g  KKA  LSvLC+  v  i  ++++ l+ ++
  Bostr.10040s0246.1.p 14 DDDLKRKMNFFKRKfPGFKKKATQLSVLCGNSVGFICHGPDNDLHVWP 61
                          67899*********4588889*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd002662.86E-17691No hitNo description
SuperFamilySSF554555.76E-13794IPR002100Transcription factor, MADS-box
PROSITE profilePS500669.4751564IPR002100Transcription factor, MADS-box
PfamPF003191.6E-81560IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MAPRGKKSNM SPDDDDLKRK MNFFKRKFPG FKKKATQLSV LCGNSVGFIC HGPDNDLHVW  60
PEPQDNPHAI KHIVDKFNAL SDHTRKHHAC DLSDFPDLKG LSDHDLRIHL DKLDSHLVGI  120
RQHKISLKRR NSKKPKPKET EEGDRLKVSD NNTTISNRDV SVSSSEGQRL GFGGKFDELS  180
YIFRGSHETV NNLGSCAASK VSRDVGVSDP FTLGFSGGDC FPVEFPSTLF TGYDPLLGAT  240
DSSSEDQNNT QLGFGGIFDE LGCIIRLPPV TDDLGSIF*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.10040s0246.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002888172.11e-104agamous-like MADS-box protein AGL49
SwissprotQ9ZUI93e-61AGL49_ARATH; Agamous-like MADS-box protein AGL49
TrEMBLD7KXG11e-102D7KXG1_ARALL; Uncharacterized protein
STRINGBostr.10040s0246.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11232928
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60040.12e-52AGAMOUS-like 49
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]