PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.10040s0194.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | NAC | ||||||||
Protein Properties | Length: 185aa MW: 22066.5 Da PI: 9.7313 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 36.7 | 1.3e-11 | 9 | 116 | 10 | 118 |
NAM 10 tdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 +++e+v +yLk +++ + +++++ d+y +Pw+L +k ++ yfF++r ++ ++ +sg W+ g+dk ++s+ Bostr.10040s0194.1.p 9 SEDEIVAQYLKMMIDNGNDWPRHFLRSQDVYCKNPWTLFdtQKPVILHDGRYFFVNRIVNSG---KTDG-CESGCWRIMGRDKLIKSEk 93 579************999666578**************5222333356688****9987643...3444.589*************986 PP NAM 96 kgelvglkktLvfykgrapkgek 118 +g+ g kk+ f + ++p+++ Bostr.10040s0194.1.p 94 TGNILGFKKVYKFCEMEKPNSVF 116 77889*********877776554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 17.076 | 1 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.4E-8 | 9 | 135 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.75E-21 | 9 | 159 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MDLKCHQLSE DEIVAQYLKM MIDNGNDWPR HFLRSQDVYC KNPWTLFDTQ KPVILHDGRY 60 FFVNRIVNSG KTDGCESGCW RIMGRDKLIK SEKTGNILGF KKVYKFCEME KPNSVFKFWE 120 KEKRRVRDKR IWVMEDCFNL QNAKRHVEDH QNMKSLKEIH LKSNENGFTN KKMVSDKVYV 180 TIFK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.10040s0194.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HE601751 | 2e-37 | HE601751.1 Arabidopsis halleri subsp. halleri BAC clone 9G1. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010473211.1 | 7e-75 | PREDICTED: uncharacterized protein LOC104752708 | ||||
TrEMBL | R0I8R2 | 2e-67 | R0I8R2_9BRAS; Uncharacterized protein | ||||
STRING | Bostr.10040s0194.1.p | 1e-135 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16194 | 11 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G60240.1 | 4e-71 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Bostr.10040s0194.1.p |