PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.10040s0089.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | NAC | ||||||||
Protein Properties | Length: 322aa MW: 35965.3 Da PI: 8.4575 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 171.7 | 2.2e-53 | 16 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+e+d+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+d Bostr.10040s0089.1.p 16 LPPGFRFHPTDEELVVHYLKKKAASVPLPV-SIIAEIDLYKFDPWELPSKASFGEHEWYFFSPRDRKYPNGVRPNRAATSGYWKATGTD 103 79****************************.89***************9888999********************************** PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 k++++ ++++vg+kk Lvfy g+ pkg ktdW+mheyrl Bostr.10040s0089.1.p 104 KPIFTCNSHKVGVKKALVFYGGKPPKGIKTDWIMHEYRL 142 *************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.03E-64 | 7 | 178 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.521 | 16 | 177 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-27 | 17 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MENMGDSSIG TGHPHLPPGF RFHPTDEELV VHYLKKKAAS VPLPVSIIAE IDLYKFDPWE 60 LPSKASFGEH EWYFFSPRDR KYPNGVRPNR AATSGYWKAT GTDKPIFTCN SHKVGVKKAL 120 VFYGGKPPKG IKTDWIMHEY RLTDGNLSTA AKPPDLATTR KNSLRLDDWV LCRIYKKNSS 180 QRPTMERVLL REDLMEGMLS KSSANSSATS VLDNNDNNNN EEHFFDGMVV SSDKRSLCGQ 240 YRMGHEASGS SSFGSFLSSK RFHHTGDLNN DNYNVSFVSM LSEIPQSSGF HANGVMDTTS 300 SLADHGGLRH AFQLPNMNWH S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-74 | 16 | 180 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-74 | 16 | 180 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-74 | 16 | 180 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-74 | 16 | 180 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-74 | 16 | 180 | 20 | 171 | NAC domain-containing protein 19 |
3swm_B | 5e-74 | 16 | 180 | 20 | 171 | NAC domain-containing protein 19 |
3swm_C | 5e-74 | 16 | 180 | 20 | 171 | NAC domain-containing protein 19 |
3swm_D | 5e-74 | 16 | 180 | 20 | 171 | NAC domain-containing protein 19 |
3swp_A | 5e-74 | 16 | 180 | 20 | 171 | NAC domain-containing protein 19 |
3swp_B | 5e-74 | 16 | 180 | 20 | 171 | NAC domain-containing protein 19 |
3swp_C | 5e-74 | 16 | 180 | 20 | 171 | NAC domain-containing protein 19 |
3swp_D | 5e-74 | 16 | 180 | 20 | 171 | NAC domain-containing protein 19 |
4dul_A | 4e-74 | 16 | 180 | 17 | 168 | NAC domain-containing protein 19 |
4dul_B | 4e-74 | 16 | 180 | 17 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00058 | PBM | Transfer from AT1G61110 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.10040s0089.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK117878 | 0.0 | AK117878.1 Arabidopsis thaliana At1g61110 mRNA for unknown protein, complete cds, clone: RAFL19-05-K20. | |||
GenBank | AY087839 | 0.0 | AY087839.1 Arabidopsis thaliana clone 38858 mRNA, complete sequence. | |||
GenBank | BT008346 | 0.0 | BT008346.1 Arabidopsis thaliana At1g61110 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010473311.1 | 0.0 | PREDICTED: NAC transcription factor 25-like | ||||
Swissprot | Q8GY42 | 0.0 | NAC25_ARATH; NAC transcription factor 25 | ||||
TrEMBL | D7KW47 | 0.0 | D7KW47_ARALL; ANAC025 | ||||
STRING | Bostr.10040s0089.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM190 | 28 | 276 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61110.1 | 0.0 | NAC domain containing protein 25 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.10040s0089.1.p |