PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.0697s0149.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family Dof
Protein Properties Length: 330aa    MW: 35718 Da    PI: 8.9899
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.0697s0149.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.56.9e-3972131362
               zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                          e+al+cprCdstntkfCy+nnysl+qPr+fCk+CrryWt+GGalrnvPvGgg r+nk+s+
  Bostr.0697s0149.1.p  72 EAALNCPRCDSTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGFRRNKRSK 131
                          6789*****************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-3655124IPR003851Zinc finger, Dof-type
PfamPF027011.9E-3274129IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.23675129IPR003851Zinc finger, Dof-type
PROSITE patternPS01361077113IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MVFSSLPVNH FDSHNWQQQG SQHQLDCVTT DQNPSNYLRQ ISSPPASQAG SSQTRVNSMV  60
ERARIAKVPL PEAALNCPRC DSTNTKFCYF NNYSLTQPRH FCKTCRRYWT RGGALRNVPV  120
GGGFRRNKRS KSNGGSGGGR SKSTVLVSSD NNTTTSSLTS HPSYSNPSKF LSYGQSPGFT  180
SNLPILPPLQ SLGDYNSSNN GLDFGEIQIS NVISGLSSSG RILDPWRLPS SQQAQQIPFL  240
INTNGLIQSS NALYPLLEGG DGAAQTRNVK AEENDQDQGR DGDGLNNLSR NFLGNTNINS  300
SGNDEYTSWG GNSSWTGFTS NNSTGHLSF*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements. {ECO:0000269|PubMed:12887587}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00407DAPTransfer from AT3G55370Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.0697s0149.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin and salicylic acid (SA). Repressed by jasmonic acid (JA). {ECO:0000269|PubMed:10758484, ECO:0000269|PubMed:12887587}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1558180.0AF155818.1 Arabidopsis thaliana zinc finger protein OBP3 mRNA, complete cds.
GenBankAK2214020.0AK221402.1 Arabidopsis thaliana mRNA for zinc finger protein OBP3, complete cds, clone: RAFL25-48-C17.
GenBankBT0330280.0BT033028.1 Arabidopsis thaliana unknown protein (At3g55370) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023638517.10.0dof zinc finger protein DOF3.6 isoform X2
SwissprotQ9M2U10.0DOF36_ARATH; Dof zinc finger protein DOF3.6
TrEMBLR0FQ930.0R0FQ93_9BRAS; Uncharacterized protein
STRINGBostr.0697s0149.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17132886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55370.11e-170OBF-binding protein 3