PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.0597s0095.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

CPP

Protein Properties

Length: 671aa MW: 73622.2 Da PI: 5.2257

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.0597s0095.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	50.6	3.8e-16	373	411	2	40
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+CnCkkskClk+YCeCfaag++C e C+C dC+Nk Bostr.0597s0095.1.p 373 SCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCIDCFNKP 411 689**********************************96 PP
2	TCR	51.1	2.6e-16	458	496	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN Bostr.0597s0095.1.p 458 RHKRGCNCKKSNCLKKYCECYQGGVGCSINCRCEGCKNA 496 589***********************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	2.3E-19	372	413	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	37.543	373	498	IPR005172	CRC domain
Pfam	PF03638	6.4E-12	375	410	IPR005172	CRC domain
SMART	SM01114	3.7E-17	458	499	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	1.0E-11	460	496	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 671 aa Download sequence Send to blast
MDTPQKSITQ IGTPISKSRF EDSPVFNYIN SLSPIRPVKS TQNPHQFSSL NFTSPPSVFT 60 SPHLTSSHKE SRFFKTHNSS SHPTNPVESR EDESTSNEEV VPEAEDTKDL NIDVSMREEA 120 LIETNPDDNP VSSPCGRDTT DLSLVPYAPP RGENGSCEDA GMELQKMYDN VQGETETPDW 180 ESLISDASEL LIFDSPDASE AFRCIMMQRA STSGARFSTG VEMQTMQPNS NKEPESSDAI 240 PYEAVSLLHR GIRRRCLDFE MPGNKQTLSE NNTAACESSS RCVVPSIGLH LNAIAMSSKD 300 CKTNVTRDYS CSGNIQVGLQ SSISTLQETL DQTENETRED ADQDVPVEPA LQELNLGSPK 360 KKRVKLDSGE GESCKRCNCK KSKCLKLYCE CFAAGVYCIE PCSCIDCFNK PIHEDTVLAT 420 RKQIESRNPL AFAPKVIRNS ESVLETGDDA SKTPASARHK RGCNCKKSNC LKKYCECYQG 480 GVGCSINCRC EGCKNAFGRK DGSFIVDMEA EQEEENETSE KNRTAKTQQN NEVLMRKEAS 540 SALPTTPTPI YRQLVQLPFS SSKNMMPPPQ SLLGGGSSSG TYIRKPDISL TQSRIEKSFE 600 TVAEDGAEEM PEILIHSPIP NIKSVSPNGK RVSPPHMESS SPGSILGRRS GGRKLILQSI 660 PSFPSLTPQH *

Sequence ? help Back to Top

Protein Sequence Length: 671 aa Download sequence Send to blast

MDTPQKSITQ IGTPISKSRF EDSPVFNYIN SLSPIRPVKS TQNPHQFSSL NFTSPPSVFT  60
SPHLTSSHKE SRFFKTHNSS SHPTNPVESR EDESTSNEEV VPEAEDTKDL NIDVSMREEA  120
LIETNPDDNP VSSPCGRDTT DLSLVPYAPP RGENGSCEDA GMELQKMYDN VQGETETPDW  180
ESLISDASEL LIFDSPDASE AFRCIMMQRA STSGARFSTG VEMQTMQPNS NKEPESSDAI  240
PYEAVSLLHR GIRRRCLDFE MPGNKQTLSE NNTAACESSS RCVVPSIGLH LNAIAMSSKD  300
CKTNVTRDYS CSGNIQVGLQ SSISTLQETL DQTENETRED ADQDVPVEPA LQELNLGSPK  360
KKRVKLDSGE GESCKRCNCK KSKCLKLYCE CFAAGVYCIE PCSCIDCFNK PIHEDTVLAT  420
RKQIESRNPL AFAPKVIRNS ESVLETGDDA SKTPASARHK RGCNCKKSNC LKKYCECYQG  480
GVGCSINCRC EGCKNAFGRK DGSFIVDMEA EQEEENETSE KNRTAKTQQN NEVLMRKEAS  540
SALPTTPTPI YRQLVQLPFS SSKNMMPPPQ SLLGGGSSSG TYIRKPDISL TQSRIEKSFE  600
TVAEDGAEEM PEILIHSPIP NIKSVSPNGK RVSPPHMESS SPGSILGRRS GGRKLILQSI  660
PSFPSLTPQH *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	3e-17	377	495	14	120	Protein lin-54 homolog
5fd3_B	3e-17	377	495	14	120	Protein lin-54 homolog
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	358	365	PKKKRVKL
2	358	366	PKKKRVKLD

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a role in development of both male and female reproductive tissues. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00433	DAP	Transfer from AT4G14770	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.0597s0095.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL161539	0.0	AL161539.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 39.
GenBank	CP002687	0.0	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBank	Z97337	0.0	Z97337.2 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020872377.1	0.0	protein tesmin/TSO1-like CXC 2 isoform X1
Swissprot	F4JIF5	0.0	TCX2_ARATH; Protein tesmin/TSO1-like CXC 2
TrEMBL	R0F1B1	0.0	R0F1B1_9BRAS; Uncharacterized protein
STRING	Bostr.0597s0095.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1467	28	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	0.0	TESMIN/TSO1-like CXC 2

Link Out ? help Back to Top
Phytozome	Bostr.0597s0095.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]