PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.0568s0516.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | Dof | ||||||||
Protein Properties | Length: 375aa MW: 40040 Da PI: 7.9854 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 124.1 | 4.4e-39 | 70 | 129 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++ +kcprC+st+tkfCyynnyslsqPryfCk+CrryWtkGG+lrn+PvGgg+rknkk s Bostr.0568s0516.1.p 70 DHPQKCPRCESTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKPS 129 6789*****************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 8.0E-35 | 58 | 123 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.2E-32 | 71 | 127 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.761 | 73 | 127 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 75 | 111 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010067 | Biological Process | procambium histogenesis | ||||
GO:0010087 | Biological Process | phloem or xylem histogenesis | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 375 aa Download sequence Send to blast |
MGLTSLQVCM DSDWLQEAES SGGSMLDSST TSPSAADILA ACSTRPQASA VAVAAAALMD 60 GGRRLRPPHD HPQKCPRCES THTKFCYYNN YSLSQPRYFC KTCRRYWTKG GTLRNIPVGG 120 GCRKNKKPSS SNSSSSTSSG KKPSNIVTTN TTDLMALAHS HQNYQNAPLG FSHFGGMMGS 180 YSTPEHSNVG FLESKYGGLL SQSPRPIDFL DSKFDLMGVN NDNLVMVDHG SNGDHHHHHH 240 NHHMGLNHGL GLNNNNNNNG GFNGISPGGN GNGGGLMDIS TCQRLMLSNY DHQHYNHQDD 300 HQRVTTITDV KPNPKLLSLD WQQDQCYSNG GGNGGVGKPD GGGYGGGGYI NGLGSSWNGL 360 MNGYGSSTKT NSLV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Promotes expression (PubMed:19915089). The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) activate gene expression that promotes radial growth of protophloem sieve elements (PubMed:30626969). Involved in the regulation of interfascicular cambium formation and vascular tissue development, particularly at a very early stage during inflorescence stem development; promotes both cambium activity and phloem specification, but prevents xylem specification (PubMed:19915089). {ECO:0000250|UniProtKB:Q9M2U1, ECO:0000269|PubMed:19915089, ECO:0000269|PubMed:30626969}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00580 | DAP | Transfer from AT5G62940 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.0568s0516.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT020467 | 0.0 | BT020467.1 Arabidopsis thaliana At5g62940 gene, complete cds. | |||
GenBank | BT020576 | 0.0 | BT020576.1 Arabidopsis thaliana At5g62940 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002866523.1 | 0.0 | dof zinc finger protein DOF5.6 | ||||
Swissprot | Q9FM03 | 0.0 | DOF56_ARATH; Dof zinc finger protein DOF5.6 | ||||
TrEMBL | D7MNC9 | 0.0 | D7MNC9_ARALL; Uncharacterized protein | ||||
STRING | Bostr.0568s0516.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6374 | 27 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62940.1 | 1e-161 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Bostr.0568s0516.1.p |
Publications ? help Back to Top | |||
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