PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.0568s0398.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | NAC | ||||||||
Protein Properties | Length: 358aa MW: 39764.5 Da PI: 4.5557 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 146.7 | 1.2e-45 | 6 | 134 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 l+pGfrFhPtd elv +yLk+kv g+k+++ ++i+e+diyk+eP dLp k ++ +++ +wyfF++r+kky++g ++nr+t+ gyWk+tg+ Bostr.0568s0398.1.p 6 LAPGFRFHPTDVELVRYYLKRKVMGRKFQV-NAIAEIDIYKFEPPDLPeKsCLGTGDLKWYFFCPREKKYPKGGKANRSTECGYWKTTGR 94 579***************************.89**************95347777888******************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 d++v ++e+vg +tL+++ g++p+g +tdWv+heyrle Bostr.0568s0398.1.p 95 DRDVSY-NDEVVGKIRTLIYHYGKTPRGDRTDWVIHEYRLE 134 *****9.999*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.75E-54 | 3 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 51.735 | 6 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.7E-24 | 8 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 358 aa Download sequence Send to blast |
MGKTNLAPGF RFHPTDVELV RYYLKRKVMG RKFQVNAIAE IDIYKFEPPD LPEKSCLGTG 60 DLKWYFFCPR EKKYPKGGKA NRSTECGYWK TTGRDRDVSY NDEVVGKIRT LIYHYGKTPR 120 GDRTDWVIHE YRLEDQVLAQ KHIPQDTYVL CVLFKKNGLG PRHGSQYGAP FKEEDWSGEE 180 EDTQNLVAVP SAENAGPGPS RETNLVATAS QSHAPKDCFT GVISESCVSD VPPLTATVLL 240 PLTSDVVAYA PMSSSPLPEV PQVPPDDDEL NSMLDLFSVV NDECLLFDDV DYQNEVRHEP 300 GVFVNEEAPV SLGDGNFSGM FDLSNELVIE LQDLIQPATP PAAQASHLDD SRSNGQT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-44 | 5 | 157 | 14 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00583 | DAP | Transfer from AT5G64060 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.0568s0398.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT011822 | 0.0 | BT011822.1 Arabidopsis thaliana At5g49950 mRNA sequence. | |||
GenBank | BT015583 | 0.0 | BT015583.1 Arabidopsis thaliana At5g64060 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006280680.1 | 0.0 | NAC domain-containing protein 82 isoform X1 | ||||
Swissprot | Q9FY82 | 1e-132 | NAC82_ARATH; NAC domain-containing protein 82 | ||||
TrEMBL | R0GQY9 | 0.0 | R0GQY9_9BRAS; Uncharacterized protein | ||||
STRING | Bostr.0568s0398.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3692 | 25 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64060.1 | 0.0 | NAC domain containing protein 103 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.0568s0398.1.p |
Publications ? help Back to Top | |||
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