PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.0568s0382.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | CAMTA | ||||||||
Protein Properties | Length: 1063aa MW: 119072 Da PI: 6.316 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 188.3 | 7.8e-59 | 19 | 136 | 2 | 118 |
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahsee 90 l+e ++rwl++ ei++iL n++k+++++e+++rp+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+++vl+cyYah+e+ Bostr.0568s0382.1.p 19 LSEaQHRWLRPAEICEILRNHQKFHIASEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSIDVLHCYYAHGED 108 45559************************************************************************************* PP CG-1 91 nptfqrrcywlLeeelekivlvhylevk 118 n++fqrrcyw+Le++l +iv+vhylevk Bostr.0568s0382.1.p 109 NENFQRRCYWMLEQDLMHIVFVHYLEVK 136 *************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 86.275 | 15 | 141 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 3.6E-87 | 18 | 136 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 8.5E-52 | 21 | 135 | IPR005559 | CG-1 DNA-binding domain |
SuperFamily | SSF81296 | 8.4E-13 | 472 | 556 | IPR014756 | Immunoglobulin E-set |
PROSITE profile | PS50297 | 19.598 | 653 | 764 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 7.93E-19 | 653 | 764 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 5.1E-18 | 653 | 765 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 1.1E-7 | 654 | 730 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 2.05E-14 | 659 | 762 | No hit | No description |
SMART | SM00248 | 2300 | 670 | 699 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 9.03 | 670 | 702 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 0.0029 | 703 | 732 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 10.873 | 703 | 735 | IPR002110 | Ankyrin repeat |
SMART | SM00015 | 0.32 | 878 | 900 | IPR000048 | IQ motif, EF-hand binding site |
SuperFamily | SSF52540 | 8.76E-8 | 879 | 928 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
PROSITE profile | PS50096 | 7.858 | 880 | 908 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.0021 | 880 | 899 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.0092 | 901 | 923 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 9.304 | 902 | 926 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 4.7E-4 | 904 | 923 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0071275 | Biological Process | cellular response to aluminum ion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1063 aa Download sequence Send to blast |
MADRGSFGYA PRLDIKQLLS EAQHRWLRPA EICEILRNHQ KFHIASEPPN RPPSGSLFLF 60 DRKVLRYFRK DGHNWRKKKD GKTVKEAHEK LKVGSIDVLH CYYAHGEDNE NFQRRCYWML 120 EQDLMHIVFV HYLEVKGNRM STSGAKENHS NSLSGTGSVN VDSTATRSSI LSPLCEDADS 180 GDSRQASSSL QSKHEPQTVV PQIMHHQNAS TMNSYNMTSV LGNRDGWTSA PGIGIVSQVH 240 GNRVKESDSQ RSGDVPVWDA SFENSLERYQ NLPYNAPLTQ TQPSNFGLMP MEGKTEKGSL 300 LTAEHLRNPL QNQVNWQIPV QENVPLQKWP MDSHSGMTDA TDLALFGQRA HENFGTFSSL 360 LGSQNQQRSS FKAPFTNNEA AYIPKLGPED LIYEASANQT LPLRKALLKE EDSLKKVDSF 420 SRWVSKELGE MEDLQMQSSS GGIAWTSVEC ETAAAGSSLS PSLSEDQRFT MIDFWPKWTQ 480 TDSEVEVMVI GTFLLSPQEV TSYGWSCMFG EVEVPAEILV DGVLCCHAPP HEVGRVPFYI 540 TCSDRFSCSE VREFDFLPGS TRKLNATDIY GANTIEASLH LRFENLLALR SSVQEHHIFE 600 KVGEKRRKIS KIMLLKDEKE SLLPVTVEKD LTELDTKERL IREEFEDKLY LWLIHKVTEE 660 GKGPNILDED GQGVLHLATA LGYDWAIKPI LAAGVSINFR DANGWSALHW AAFSGREDTV 720 AVLVSLGADA GALADPSPEH PLGKTAADLA YGNGHRGISG FLAESSLTSY LEKLTVDAKE 780 NSSADSSGAK AVLTVAERTA TPMSYGDVPE TLSMKDSLTA VFNATQAADR LHQVFRMQSF 840 QRKQLSELGD DNEFDISDEL AVSFAAAKTK KPGHSNGAVH AAAVQIQKKY RGWKKRKEFL 900 LIRQRIVKIQ AHVRGHQVRK QYRAIIWSVG LLEKIILRWR RKGSGLRGFK RDTITKPPEP 960 VCPALQEDDY DFLKEGRKQT EERLQKALTR VKSMAQYPEA RAQYRRLLTV VEGFRETEAS 1020 SSSSLKNNNS NTEEAANYNE EDDLIDIDSL LDEDTFMSLA FE* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25627216, ECO:0000305|PubMed:11925432}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00043 | PBM | Transfer from AT5G64220 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.0568s0382.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:25627216}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK229403 | 0.0 | AK229403.1 Arabidopsis thaliana mRNA for Calmodulin-binding transcription activator 2, complete cds, clone: RAFL16-66-C08. | |||
GenBank | BT010874 | 0.0 | BT010874.1 Arabidopsis thaliana At5g64220 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020883660.1 | 0.0 | calmodulin-binding transcription activator 2 isoform X1 | ||||
Swissprot | Q6NPP4 | 0.0 | CMTA2_ARATH; Calmodulin-binding transcription activator 2 | ||||
TrEMBL | D7MR88 | 0.0 | D7MR88_ARALL; Calmodulin-binding protein | ||||
STRING | Bostr.0568s0382.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4082 | 24 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64220.2 | 0.0 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |
Link Out ? help Back to Top | |
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Phytozome | Bostr.0568s0382.1.p |
Publications ? help Back to Top | |||
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