PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.0568s0382.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family CAMTA
Protein Properties Length: 1063aa    MW: 119072 Da    PI: 6.316
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.0568s0382.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1188.37.8e-59191362118
                 CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahsee 90 
                          l+e ++rwl++ ei++iL n++k+++++e+++rp+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+++vl+cyYah+e+
  Bostr.0568s0382.1.p  19 LSEaQHRWLRPAEICEILRNHQKFHIASEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSIDVLHCYYAHGED 108
                          45559************************************************************************************* PP

                 CG-1  91 nptfqrrcywlLeeelekivlvhylevk 118
                          n++fqrrcyw+Le++l +iv+vhylevk
  Bostr.0568s0382.1.p 109 NENFQRRCYWMLEQDLMHIVFVHYLEVK 136
                          *************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143786.27515141IPR005559CG-1 DNA-binding domain
SMARTSM010763.6E-8718136IPR005559CG-1 DNA-binding domain
PfamPF038598.5E-5221135IPR005559CG-1 DNA-binding domain
SuperFamilySSF812968.4E-13472556IPR014756Immunoglobulin E-set
PROSITE profilePS5029719.598653764IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484037.93E-19653764IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.205.1E-18653765IPR020683Ankyrin repeat-containing domain
PfamPF127961.1E-7654730IPR020683Ankyrin repeat-containing domain
CDDcd002042.05E-14659762No hitNo description
SMARTSM002482300670699IPR002110Ankyrin repeat
PROSITE profilePS500889.03670702IPR002110Ankyrin repeat
SMARTSM002480.0029703732IPR002110Ankyrin repeat
PROSITE profilePS5008810.873703735IPR002110Ankyrin repeat
SMARTSM000150.32878900IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525408.76E-8879928IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500967.858880908IPR000048IQ motif, EF-hand binding site
PfamPF006120.0021880899IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0092901923IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.304902926IPR000048IQ motif, EF-hand binding site
PfamPF006124.7E-4904923IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071275Biological Processcellular response to aluminum ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1063 aa     Download sequence    Send to blast
MADRGSFGYA PRLDIKQLLS EAQHRWLRPA EICEILRNHQ KFHIASEPPN RPPSGSLFLF  60
DRKVLRYFRK DGHNWRKKKD GKTVKEAHEK LKVGSIDVLH CYYAHGEDNE NFQRRCYWML  120
EQDLMHIVFV HYLEVKGNRM STSGAKENHS NSLSGTGSVN VDSTATRSSI LSPLCEDADS  180
GDSRQASSSL QSKHEPQTVV PQIMHHQNAS TMNSYNMTSV LGNRDGWTSA PGIGIVSQVH  240
GNRVKESDSQ RSGDVPVWDA SFENSLERYQ NLPYNAPLTQ TQPSNFGLMP MEGKTEKGSL  300
LTAEHLRNPL QNQVNWQIPV QENVPLQKWP MDSHSGMTDA TDLALFGQRA HENFGTFSSL  360
LGSQNQQRSS FKAPFTNNEA AYIPKLGPED LIYEASANQT LPLRKALLKE EDSLKKVDSF  420
SRWVSKELGE MEDLQMQSSS GGIAWTSVEC ETAAAGSSLS PSLSEDQRFT MIDFWPKWTQ  480
TDSEVEVMVI GTFLLSPQEV TSYGWSCMFG EVEVPAEILV DGVLCCHAPP HEVGRVPFYI  540
TCSDRFSCSE VREFDFLPGS TRKLNATDIY GANTIEASLH LRFENLLALR SSVQEHHIFE  600
KVGEKRRKIS KIMLLKDEKE SLLPVTVEKD LTELDTKERL IREEFEDKLY LWLIHKVTEE  660
GKGPNILDED GQGVLHLATA LGYDWAIKPI LAAGVSINFR DANGWSALHW AAFSGREDTV  720
AVLVSLGADA GALADPSPEH PLGKTAADLA YGNGHRGISG FLAESSLTSY LEKLTVDAKE  780
NSSADSSGAK AVLTVAERTA TPMSYGDVPE TLSMKDSLTA VFNATQAADR LHQVFRMQSF  840
QRKQLSELGD DNEFDISDEL AVSFAAAKTK KPGHSNGAVH AAAVQIQKKY RGWKKRKEFL  900
LIRQRIVKIQ AHVRGHQVRK QYRAIIWSVG LLEKIILRWR RKGSGLRGFK RDTITKPPEP  960
VCPALQEDDY DFLKEGRKQT EERLQKALTR VKSMAQYPEA RAQYRRLLTV VEGFRETEAS  1020
SSSSLKNNNS NTEEAANYNE EDDLIDIDSL LDEDTFMSLA FE*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25627216, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00043PBMTransfer from AT5G64220Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.0568s0382.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:25627216}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2294030.0AK229403.1 Arabidopsis thaliana mRNA for Calmodulin-binding transcription activator 2, complete cds, clone: RAFL16-66-C08.
GenBankBT0108740.0BT010874.1 Arabidopsis thaliana At5g64220 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020883660.10.0calmodulin-binding transcription activator 2 isoform X1
SwissprotQ6NPP40.0CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBLD7MR880.0D7MR88_ARALL; Calmodulin-binding protein
STRINGBostr.0568s0382.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40822452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]