PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.0568s0314.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family WRKY
Protein Properties Length: 193aa    MW: 21837 Da    PI: 5.3448
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.0568s0314.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY87.98.6e-28107165159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          +dDg++WrKYG+K+vk++ + r+YY+C+s+gC+vkk+ver+ ed  +v++tYeg Hnhe
  Bostr.0568s0314.1.p 107 MDDGFKWRKYGKKTVKNNINKRNYYKCSSEGCSVKKRVERDGEDAAYVITTYEGVHNHE 165
                          59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.1E-3194167IPR003657WRKY domain
SuperFamilySSF1182902.62E-2699167IPR003657WRKY domain
PROSITE profilePS5081128.839102167IPR003657WRKY domain
SMARTSM007744.7E-31107166IPR003657WRKY domain
PfamPF031062.4E-22108165IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MNISQNPSPN FTYFSDENSI NPFMDNNDFS NLMFFDDEGG NNGLIEEEIS SPTSIISSET  60
FTGESGGSGI ATTLIKKEST NRGSKESETK EMGNRVAFRT RSKIDVMDDG FKWRKYGKKT  120
VKNNINKRNY YKCSSEGCSV KKRVERDGED AAYVITTYEG VHNHESPSHV YYNDMVLSFD  180
HDKWNQHSLL QC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-2497168778Probable WRKY transcription factor 4
2lex_A2e-2497168778Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Involved in defense responses. May act as positive regulator of salicylic acid (SA)-mediated signaling and negative regulator of jasmonic acid (JA)-mediated signaling (PubMed:21030507). {ECO:0000250, ECO:0000269|PubMed:21030507}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.0568s0314.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4938130.0AB493813.1 Arabidopsis thaliana At5g64810 mRNA for hypothetical protein, partial cds, clone: RAAt5g64810.
GenBankAF4262520.0AF426252.1 Arabidopsis thaliana WRKY transcription factor 51 (WRKY51) mRNA, complete cds.
GenBankBT0257550.0BT025755.1 Arabidopsis thaliana At5g64810 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002864923.11e-125probable WRKY transcription factor 51
SwissprotQ93WU91e-126WRK51_ARATH; Probable WRKY transcription factor 51
TrEMBLA0A178U8791e-124A0A178U879_ARATH; WRKY51
TrEMBLD7MSJ91e-124D7MSJ9_ARALL; WRKY DNA-binding protein 51
STRINGBostr.0568s0314.1.p1e-142(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57112747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64810.11e-100WRKY DNA-binding protein 51
Publications ? help Back to Top
  1. Yan C, et al.
    Injury Activates Ca2+/Calmodulin-Dependent Phosphorylation of JAV1-JAZ8-WRKY51 Complex for Jasmonate Biosynthesis.
    Mol. Cell, 2018. 70(1): p. 136-149.e7
    [PMID:29625034]