PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.0568s0257.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

HD-ZIP

Protein Properties

Length: 317aa MW: 35224.1 Da PI: 4.6936

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.0568s0257.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.8	4.3e-19	72	125	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe ++++ +++ +LA++lgL+ rqV +WFqNrRa++k Bostr.0568s0257.1.p 72 KKRRLSVEQVKALEKNFEIDNKLEPDRKVKLAQELGLQPRQVAIWFQNRRARWK 125 56689************************************************9 PP
2	HD-ZIP_I/II	129.2	1.7e-41	71	163	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 ekkrrls eqvk+LE++Fe ++kLep+rKv+la+eLglqprqva+WFqnrRAR+ktkqlE+dy +Lk+++dalk++++++++++++L + Bostr.0568s0257.1.p 71 EKKRRLSVEQVKALEKNFEIDNKLEPDRKVKLAQELGLQPRQVAIWFQNRRARWKTKQLERDYGVLKSNFDALKRSRDSIQRDNDSLLGQ 160 69*************************************************************************************999 PP HD-ZIP_I/II 91 lke 93 +ke Bostr.0568s0257.1.p 161 IKE 163 986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.04E-19	60	129	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.637	67	127	IPR001356	Homeobox domain
SMART	SM00389	1.0E-18	70	131	IPR001356	Homeobox domain
Pfam	PF00046	3.3E-16	72	125	IPR001356	Homeobox domain
CDD	cd00086	7.70E-18	72	128	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.9E-20	74	134	IPR009057	Homeodomain-like
PRINTS	PR00031	7.9E-6	98	107	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	102	125	IPR017970	Homeobox, conserved site
PRINTS	PR00031	7.9E-6	107	123	IPR000047	Helix-turn-helix motif
Pfam	PF02183	1.5E-16	127	168	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009737	Biological Process	response to abscisic acid
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042803	Molecular Function	protein homodimerization activity
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MKRSRGSSDS LASFLPIRHS TTDKQISPRP TNTGFLYSGA GDYSQMFDAL EDDGSLEDMG 60 GVGHASSTAA EKKRRLSVEQ VKALEKNFEI DNKLEPDRKV KLAQELGLQP RQVAIWFQNR 120 RARWKTKQLE RDYGVLKSNF DALKRSRDSI QRDNDSLLGQ IKELRAKLNV DGVNGVEENG 180 VVKAAEANQT VMANNEVLEL SHRPPPPPPP QPPHIPTEAP TSELAYEMFS IFPRTESFRE 240 DPADSSDSSA VLNEEYSPTT VEAAGAVAAT AVEMSTMGCF SQFVKMEEHE DLFSGEEACK 300 LFADNEQWYC SDQWNS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	119	127	RRARWKTKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that acts as a positive regulator of ABA-responsiveness, mediating the inhibitory effect of ABA on growth during seedling establishment. Binds to the DNA sequence 5'-CAATNATTG-3'. {ECO:0000269\|PubMed:12678559}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00587	DAP	Transfer from AT5G65310	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.0568s0257.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by abscisic acid (ABA) and by salt stress. {ECO:0000269\|PubMed:12678559, ECO:0000269\|PubMed:16055682}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF325054	0.0	AF325054.2 Arabidopsis thaliana AT5g65310 (AT5g65310/MNA5_4) mRNA, complete cds.
GenBank	AY074293	0.0	AY074293.1 Arabidopsis thaliana putative homeobox-leucine zipper protein ATHB-5 (At5g65310) mRNA, complete cds.
GenBank	AY091340	0.0	AY091340.1 Arabidopsis thaliana putative homeobox-leucine zipper protein ATHB-5 (HD-zip protein ATHB-5) (At5g65310) mRNA, complete cds.
GenBank	X67033	0.0	X67033.1 A.thaliana mRNA Athb-5.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010484381.1	0.0	PREDICTED: homeobox-leucine zipper protein ATHB-5-like isoform X1
Swissprot	P46667	0.0	ATHB5_ARATH; Homeobox-leucine zipper protein ATHB-5
TrEMBL	A0A178U859	0.0	A0A178U859_ARATH; HB5
STRING	Bostr.0568s0257.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12986	15	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65310.1	1e-179	homeobox protein 5

Link Out ? help Back to Top
Phytozome	Bostr.0568s0257.1.p

Publications ? help Back to Top
Cassan-Wang H, et al. Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis. Front Plant Sci, 2013. 4: p. 189 [PMID:23781226] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239] Stamm P, et al. The Transcription Factor ATHB5 Affects GA-Mediated Plasticity in Hypocotyl Cell Growth during Seed Germination. Plant Physiol., 2017. 173(1): p. 907-917 [PMID:27872245]