PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.0568s0223.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | bHLH | ||||||||
Protein Properties | Length: 351aa MW: 39214.8 Da PI: 4.4088 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.4 | 2.2e-12 | 179 | 222 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL A++Y+k+L Bostr.0568s0223.1.p 179 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDAIDYMKEL 222 589*********************66......****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.643 | 173 | 222 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.49E-16 | 176 | 241 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.3E-10 | 179 | 222 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.6E-12 | 179 | 228 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-16 | 180 | 240 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.35E-5 | 180 | 222 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence Send to blast |
MELSTQMNVF EELLVPTKQE TTDNNINNLS FNGGFDHHQF FPNGYSIDYL CFNNEEEDEN 60 TLLYPSSFMD LISQPPPLLL NQPPPLQPPS PPLSSSAATA AATFDYPFLE ALQEIIDSSS 120 SSPPLILQNG QEENFNNPTS YPSPLMESDQ SKSFSVGYCG GETNKKKSKK LDGQPSKNLM 180 AERRRRKRLN DRLSMLRSIV PKISKMDRTS ILGDAIDYMK ELLDKINKLQ DEEQELGNSN 240 NSHHSKLFGD LKDLNTNEPL VRNSPKFEID RRDEDTRVDI CCSPKPGLLL STVNTLETLG 300 LEIEQCVISC FSDFSLQASC SEGAEQRDFI TSEDIKQALF RNAGYGGSCL * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 9e-13 | 174 | 252 | 5 | 83 | Transcription factor MYC2 |
5gnj_B | 9e-13 | 174 | 252 | 5 | 83 | Transcription factor MYC2 |
5gnj_E | 9e-13 | 174 | 252 | 5 | 83 | Transcription factor MYC2 |
5gnj_F | 9e-13 | 174 | 252 | 5 | 83 | Transcription factor MYC2 |
5gnj_G | 9e-13 | 174 | 252 | 5 | 83 | Transcription factor MYC2 |
5gnj_I | 9e-13 | 174 | 252 | 5 | 83 | Transcription factor MYC2 |
5gnj_M | 9e-13 | 174 | 252 | 5 | 83 | Transcription factor MYC2 |
5gnj_N | 9e-13 | 174 | 252 | 5 | 83 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 164 | 186 | KKKSKKLDGQPSKNLMAERRRRK |
2 | 181 | 188 | ERRRRKRL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.0568s0223.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY085134 | 0.0 | AY085134.1 Arabidopsis thaliana clone 13267 mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_569014.1 | 0.0 | beta HLH protein 93 | ||||
Swissprot | Q9LSL1 | 0.0 | BH093_ARATH; Transcription factor bHLH93 | ||||
TrEMBL | A0A178UDV4 | 0.0 | A0A178UDV4_ARATH; BHLH093 | ||||
STRING | Bostr.0568s0223.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2043 | 28 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65640.1 | 0.0 | beta HLH protein 93 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.0568s0223.1.p |
Publications ? help Back to Top | |||
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