PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.0568s0168.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family LBD
Protein Properties Length: 248aa    MW: 26845.1 Da    PI: 7.9374
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.0568s0168.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260101.38.9e-322103197
               DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                          +C++C+vlr++C+++C+l+p++     +++q +++ +v+k+FG++ ++++++a+pe++r+++++sl+yeA+ r+ +Pv+Ga+g+++++++
  Bostr.0568s0168.1.p   2 SCNGCRVLRKGCSENCILRPCIqwidtADAQGHATVFVAKFFGRAGLMSFISAVPESQRPALFQSLLYEACGRTVNPVNGAIGMLWTGNW 91 
                          6*********************9998666789********************************************************** PP

               DUF260  86 qleqlkaelall 97 
                          +++q+++e++l+
  Bostr.0568s0168.1.p  92 NICQAAVETVLR 103
                          ******999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089120.6851107IPR004883Lateral organ boundaries, LOB
PfamPF031951.7E-262101IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006807Biological Processnitrogen compound metabolic process
GO:0060776Biological Processsimple leaf morphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSENCILR PCIQWIDTAD AQGHATVFVA KFFGRAGLMS FISAVPESQR  60
PALFQSLLYE ACGRTVNPVN GAIGMLWTGN WNICQAAVET VLRGGSLRPI PELLTHGGGF  120
AGFPSPTSEE ASEICTEMLN LQQNDSSDRN IYHHSRFSSS RSRSTMDSSS PTKRKRVTSE  180
ERQPSSELDL SLIPKSTPSS TRRRSVTPSM NSEDSVTTTT TTSSFCDKGE LYGNGGGETS  240
KLLNLFV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.0568s0168.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738720.0AB473872.1 Arabidopsis thaliana ASL39 mRNA for ASYMMETRIC LEAVES2-like 39 protein, complete cds.
GenBankAF4478940.0AF447894.1 Arabidopsis thaliana LOB DOMAIN 37 (LBD37) mRNA, complete cds.
GenBankBT0244770.0BT024477.1 Arabidopsis thaliana At5g67420 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010484498.11e-154PREDICTED: LOB domain-containing protein 37
SwissprotQ9FN111e-153LBD37_ARATH; LOB domain-containing protein 37
TrEMBLA0A178UGV81e-150A0A178UGV8_ARATH; LBD37
STRINGBostr.0568s0168.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82128122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.11e-139LOB domain-containing protein 37
Publications ? help Back to Top
  1. Menz J,Li Z,Schulze WX,Ludewig U
    Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.
    Plant J., 2016. 88(5): p. 717-734
    [PMID:27419465]