PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.0568s0123.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | Nin-like | ||||||||
Protein Properties | Length: 278aa MW: 32259.6 Da PI: 6.5383 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 82.4 | 4.4e-26 | 157 | 206 | 3 | 52 |
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++s e++++yF++pi++AAkeL+++ T+LK++CR++GI+RWPhRk++sl Bostr.0568s0123.1.p 157 NSLSREMMKQYFYMPIAKAAKELNIGITLLKKRCRELGIPRWPHRKLTSL 206 67999******************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 18.803 | 142 | 226 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.8E-21 | 159 | 206 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
MADPNPLMNW SEANNYESFL QEDIFSFLDQ SLFLDHNSFV NPFKDFQTQS WFSSQDSIVN 60 PMSTTFATDH TFLASLDLEA ISSTFSLDVL SGSWNENNSN YNNQVEPILD EILRSANSIG 120 DPNMEKIMHE DDNTIKETTS QKRMIMKRRY REDGVINSLS REMMKQYFYM PIAKAAKELN 180 IGITLLKKRC RELGIPRWPH RKLTSLNALI TNLKDLLRNT EGETNKSKLR NALELLEMEK 240 KMIEEVPDLE FGEKTKRLRQ ACFKANYKRR RLFSPSS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 267 | 271 | KRRRL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.0568s0123.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB026640 | 1e-134 | AB026640.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K8A10. | |||
GenBank | CP002688 | 1e-134 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006281487.1 | 1e-171 | protein RKD3 | ||||
Swissprot | Q9FGD1 | 1e-165 | RKD3_ARATH; Protein RKD3 | ||||
TrEMBL | R0GPV5 | 1e-170 | R0GPV5_9BRAS; Uncharacterized protein | ||||
STRING | Bostr.0568s0123.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12180 | 19 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66990.1 | 1e-156 | RWP-RK domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Bostr.0568s0123.1.p |
Publications ? help Back to Top | |||
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