PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.0568s0116.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | Dof | ||||||||
Protein Properties | Length: 225aa MW: 23786.3 Da PI: 9.0568 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 119.8 | 1e-37 | 26 | 86 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++l+cprCdstntkfCyynny+ sqPr+fCk+CrryWt+GG+lr++PvGg +rk+ k+s Bostr.0568s0116.1.p 26 QQEQLPCPRCDSTNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDIPVGGVSRKSSKRS 86 57899***************************************************98875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-33 | 2 | 74 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 5.1E-33 | 28 | 84 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.77 | 30 | 84 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 32 | 68 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MPSELCESRR ISKIPHGGAV AIPADQQEQL PCPRCDSTNT KFCYYNNYNF SQPRHFCKSC 60 RRYWTHGGTL RDIPVGGVSR KSSKRSRTCS SSAATTTVVG SRNFPLQATP VLFPQSSSNG 120 GSTAAKGSAS SLYGGFTSLL NYNAAVSRNG PGGGFNGPDG FSLGLGHGSY FDDVRFGQGI 180 TVWPFSTGAT DAATTTSHVA QIPATWQFEG PESKVGFVSG DYLA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00593 | DAP | Transfer from AT5G66940 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.0568s0116.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB026640 | 0.0 | AB026640.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K8A10. | |||
GenBank | BT029523 | 0.0 | BT029523.1 Arabidopsis thaliana At5g66940 mRNA, complete cds. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010484567.1 | 1e-144 | PREDICTED: dof zinc finger protein DOF5.8-like | ||||
Swissprot | Q9FGD6 | 1e-136 | DOF58_ARATH; Dof zinc finger protein DOF5.8 | ||||
TrEMBL | V4KJ14 | 1e-139 | V4KJ14_EUTSA; Uncharacterized protein | ||||
STRING | Bostr.0568s0116.1.p | 1e-165 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2286 | 28 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66940.1 | 4e-98 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Bostr.0568s0116.1.p |
Publications ? help Back to Top | |||
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