PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.0556s0784.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | NAC | ||||||||
Protein Properties | Length: 121aa MW: 13486 Da PI: 6.2344 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 41 | 6.1e-13 | 22 | 70 | 1 | 48 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLp 48 lppG++F Pt++el+++yLk+ ++g+k++ +v i++v+iy+++P+++ Bostr.0556s0784.1.p 22 LPPGYKFAPTEQELISCYLKPYLDGNKNSSLNVpIHHVNIYESNPEQFS 70 79*************************9998999************986 PP | |||||||
2 | NAM | 31.6 | 4.9e-10 | 76 | 111 | 91 | 127 |
NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyr 127 ++ + ++ +vg k+ L++y g++p+g+kt+W+m+ey Bostr.0556s0784.1.p 76 KINA-GEGVVGYKTALAYYIGKQPSGVKTNWLMQEYW 111 5655.7889***************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.97E-26 | 11 | 118 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 13.493 | 22 | 121 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.6E-11 | 23 | 110 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 121 aa Download sequence Send to blast |
IPFSSSSAAD NLSSPSTKPY LLPPGYKFAP TEQELISCYL KPYLDGNKNS SLNVPIHHVN 60 IYESNPEQFS GFCAQKINAG EGVVGYKTAL AYYIGKQPSG VKTNWLMQEY WFHQSSDDNE 120 K |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.0556s0784.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_191215.1 | 9e-41 | NAC domain containing protein 65 | ||||
Refseq | XP_002878093.1 | 6e-40 | NAC transcription factor 29 | ||||
TrEMBL | D7LVH1 | 1e-38 | D7LVH1_ARALL; Uncharacterized protein | ||||
TrEMBL | Q9LXY4 | 2e-39 | Q9LXY4_ARATH; NAC domain containing protein 65 | ||||
STRING | Bostr.0556s0784.1.p | 4e-85 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2793 | 15 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56560.1 | 2e-38 | NAC domain containing protein 65 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.0556s0784.1.p |