PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.0556s0732.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family NAC
Protein Properties Length: 246aa    MW: 27653.3 Da    PI: 9.5002
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.0556s0732.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM129.33e-4051361128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                          lp+GfrF Pt+ el+++yLk ++ g + ++++ i+ +d+++veP +Lp+    +++++ ++w fF++r++++a+g r++r+t+sgyWkat
  Bostr.0556s0732.1.p   5 LPVGFRFYPTEVELLTFYLKIQLGGGNATIHSLIPILDVFSVEPTQLPNlageRCRGDAEQWLFFVPRQEREARGGRPSRTTSSGYWKAT 94 
                          79****************************999**************9656766667888****************************** PP

                  NAM  87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          g+  +v+s +++++g+kkt+vfy+g+ap+g+kt+W m+ey++
  Bostr.0556s0732.1.p  95 GSPGPVFSPDNRVIGIKKTMVFYTGKAPTGRKTKWKMNEYKA 136
                          ****************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.14E-434161IPR003441NAC domain
PROSITE profilePS5100546.4055161IPR003441NAC domain
PfamPF023651.2E-196135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MGEELPVGFR FYPTEVELLT FYLKIQLGGG NATIHSLIPI LDVFSVEPTQ LPNLAGERCR  60
GDAEQWLFFV PRQEREARGG RPSRTTSSGY WKATGSPGPV FSPDNRVIGI KKTMVFYTGK  120
APTGRKTKWK MNEYKAVDET ASVSTIPKLR REFSICRIYI KSGSSRAFDR RPIEAHGIER  180
KLPRNRVETS SRATISTSPE TSYSGEDKVD LPVNATTITE SNSEMVDGLS QPFWEWEKMN  240
WSSPY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-32516617170NO APICAL MERISTEM PROTEIN
1ut4_B2e-32516617170NO APICAL MERISTEM PROTEIN
1ut7_A2e-32516617170NO APICAL MERISTEM PROTEIN
1ut7_B2e-32516617170NO APICAL MERISTEM PROTEIN
3swm_A3e-32516620173NAC domain-containing protein 19
3swm_B3e-32516620173NAC domain-containing protein 19
3swm_C3e-32516620173NAC domain-containing protein 19
3swm_D3e-32516620173NAC domain-containing protein 19
3swp_A3e-32516620173NAC domain-containing protein 19
3swp_B3e-32516620173NAC domain-containing protein 19
3swp_C3e-32516620173NAC domain-containing protein 19
3swp_D3e-32516620173NAC domain-containing protein 19
4dul_A2e-32516617170NAC domain-containing protein 19
4dul_B2e-32516617170NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.0556s0732.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1386411e-110AL138641.2 Arabidopsis thaliana DNA chromosome 3, BAC clone T22K7.
GenBankCP0026861e-110CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001118771.11e-160NAC domain containing protein 61
SwissprotQ9M2901e-148NAC61_ARATH; Putative NAC domain-containing protein 61
TrEMBLB3H5061e-158B3H506_ARATH; NAC domain containing protein 61
STRINGBostr.0556s0732.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14452893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44350.21e-163NAC domain containing protein 61