PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.0556s0726.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family NAC
Protein Properties Length: 336aa    MW: 37910.2 Da    PI: 4.8382
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.0556s0726.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1561.6e-48141392128
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                           pGf+F+Ptd elv++yLk+k++g + ++  +i+ev+i+++ePwdLp ++v ++++ew+fF+ r kky++g++++ratk gyWkatgk++
  Bostr.0556s0726.1.p  14 FPGFKFSPTDIELVSYYLKRKMDGLERSV-GIIPEVEICNFEPWDLPdMSVVKSDSEWFFFCARGKKYPHGSQNRRATKMGYWKATGKER 102
                          59************************999.99***************767778899********************************** PP

                  NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          ev+s ++e++g+k+tLvf+ grapkge+t+W+mhey +
  Bostr.0556s0726.1.p 103 EVKS-GSEVIGTKRTLVFHIGRAPKGERTEWIMHEYCM 139
                          ****.9******************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-5310154IPR003441NAC domain
PROSITE profilePS5100550.61813155IPR003441NAC domain
PfamPF023656.7E-2515138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MATVPVESAV ATTFPGFKFS PTDIELVSYY LKRKMDGLER SVGIIPEVEI CNFEPWDLPD  60
MSVVKSDSEW FFFCARGKKY PHGSQNRRAT KMGYWKATGK EREVKSGSEV IGTKRTLVFH  120
IGRAPKGERT EWIMHEYCMI GESLDALVIC RLRRNTEFQG ATIQKSPQPS ILPDKQVNTQ  180
NEAIAESISG WEDMVDFYLS SSQSEQKLLG EIAESSQSSQ NPQVPTEEDF YADILMDEIV  240
KLDDPAVSGN TLINVPRLQS ESNTTRVLHL PDMVDKQMQS LLQKLPLQND TGEENNISMS  300
NCFIGIYSIK SINRARWDVV AWVLVMISVL VFYLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-391515522168NAC domain-containing protein 19
3swm_B3e-391515522168NAC domain-containing protein 19
3swm_C3e-391515522168NAC domain-containing protein 19
3swm_D3e-391515522168NAC domain-containing protein 19
3swp_A3e-391515522168NAC domain-containing protein 19
3swp_B3e-391515522168NAC domain-containing protein 19
3swp_C3e-391515522168NAC domain-containing protein 19
3swp_D3e-391515522168NAC domain-containing protein 19
3ulx_A3e-391515217165Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcription factor involved in modulation of abscisic acid (ABA) signaling. Attenuates ABA sensitivity and glucose-induced ABA accumulation. Reduces the expression of ABI4 gene. {ECO:0000250|UniProtKB:Q949N0, ECO:0000269|PubMed:24625790}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.0556s0726.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By glucose (PubMed:24625790). Induced by salt, drought stress and methyl methanesulfonate (MMS) treatment (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:24625790}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006292920.10.0NAC domain-containing protein 60 isoform X2
SwissprotQ9LXL90.0NAC60_ARATH; NAC domain-containing protein 60
TrEMBLR0HPC60.0R0HPC6_9BRAS; Uncharacterized protein
STRINGBostr.0556s0726.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43092356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44290.10.0NAC domain containing protein 60
Publications ? help Back to Top
  1. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]