PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.0556s0119.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family M-type_MADS
Protein Properties Length: 377aa    MW: 42517.7 Da    PI: 6.7362
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.0556s0119.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF64.98.6e-211053245
                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                         + en+  rq tf+kR++gilKKA+ELS+LCd+++ +++fs+tgk
  Bostr.0556s0119.1.p 10 KLENTNGRQSTFAKRKHGILKKANELSILCDIDIVLLMFSPTGK 53
                         6799**************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.053153IPR002100Transcription factor, MADS-box
SMARTSM004321.8E-30160IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.58E-25294IPR002100Transcription factor, MADS-box
CDDcd002661.26E-24282No hitNo description
PRINTSPR004043.1E-17323IPR002100Transcription factor, MADS-box
PfamPF003194.8E-181153IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-172338IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-173859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MGRVKLKIKK LENTNGRQST FAKRKHGILK KANELSILCD IDIVLLMFSP TGKAALCCGT  60
RSSMEEVIAK FSQVTPQERT KRKFESLENL KKTFQKLDHD VNIREFIASS SSTIEDLSTQ  120
ASILQARISE IHGRLSYWTE PDKINNVELL GQLEISIRQS IDQLRAHKEH FGQQQHARQI  180
ENANFVKDWS TCSMQDGIQI PLEQQLQSMS WILNSNTTNI VTEEHNSIPQ REVECSASSS  240
FGSYPGYFGT GKSPEITISG QETSFLDELN TGQLKPQSSS HQQFTNNNIT AYNPSLQNDL  300
NHHQPLPPPP PPPPQVYIPM TQREYHMNGF FEAPPPGSSA YNNNTNLTRF SSNSSFPCSI  360
SMFDEEYLFS QMQQPN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A6e-13192190MEF2 CHIMERA
6byy_B6e-13192190MEF2 CHIMERA
6byy_C6e-13192190MEF2 CHIMERA
6byy_D6e-13192190MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.0556s0119.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4464590.0DQ446459.1 Arabidopsis thaliana clone pENTR221-At2g03060 MADS-box family protein (At2g03060) mRNA, complete cds.
GenBankDQ6529540.0DQ652954.1 Arabidopsis thaliana clone 0000017365_0000012150 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002875185.10.0agamous-like MADS-box protein AGL30 isoform X2
SwissprotQ1PFA40.0AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBLD7LQC80.0D7LQC8_ARALL; Predicted protein
STRINGBostr.0556s0119.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87542539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03060.20.0AGAMOUS-like 30
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]