PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bostr.0556s0069.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 379aa MW: 43252.7 Da PI: 6.4595 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 162.4 | 1.7e-50 | 52 | 177 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 +pGfrFhPt+eel+ +yL++kvegk++++ e i+ +d+y+++Pw+Lp++++ +ekewyf+++rd+ky++g+r+nr+t+sgyWkatg d+ Bostr.0556s0069.2.p 52 MPGFRFHPTEEELIEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPAMAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRM 140 79***************************.89***************888889************************************* PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + s++ + +glkktLvfy+g+apkg++t+W+m+eyrl Bostr.0556s0069.2.p 141 IRSETYRPIGLKKTLVFYSGKAPKGTRTSWIMNEYRL 177 ***********************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 55.894 | 51 | 198 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 4.32E-56 | 51 | 198 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.9E-25 | 53 | 177 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 379 aa Download sequence Send to blast |
MAIVSSTTSI IPMSNQVNNN EKGIEDDDHK GGHESNVQND DEADDHDHDM VMPGFRFHPT 60 EEELIEFYLR RKVEGKRFNV ELITFLDLYR YDPWELPAMA AIGEKEWYFY VPRDRKYRNG 120 DRPNRVTTSG YWKATGADRM IRSETYRPIG LKKTLVFYSG KAPKGTRTSW IMNEYRLPHH 180 ETEKYQKAEI SLCRVYKRPG VEDHPFLPRS LSTRHHHNNQ NSSSSSSRLA LRQQQHHSSS 240 SNHSDNNLNN NNTNKNLEKL STEYSGDGST TTTTNSNSDV TIALANQNIY RPMPFDASNN 300 TSIISTSNQE DDGTAIYDDL QRLVNYQISD GALTPQTQAT LAMSMIPAGT IPNNALWDMW 360 NPIVPDGNRD HYTNIPFK* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-56 | 42 | 198 | 8 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-56 | 42 | 198 | 8 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-56 | 42 | 198 | 8 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-56 | 42 | 198 | 8 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-56 | 42 | 198 | 11 | 168 | NAC domain-containing protein 19 |
3swm_B | 2e-56 | 42 | 198 | 11 | 168 | NAC domain-containing protein 19 |
3swm_C | 2e-56 | 42 | 198 | 11 | 168 | NAC domain-containing protein 19 |
3swm_D | 2e-56 | 42 | 198 | 11 | 168 | NAC domain-containing protein 19 |
3swp_A | 2e-56 | 42 | 198 | 11 | 168 | NAC domain-containing protein 19 |
3swp_B | 2e-56 | 42 | 198 | 11 | 168 | NAC domain-containing protein 19 |
3swp_C | 2e-56 | 42 | 198 | 11 | 168 | NAC domain-containing protein 19 |
3swp_D | 2e-56 | 42 | 198 | 11 | 168 | NAC domain-containing protein 19 |
4dul_A | 2e-56 | 42 | 198 | 8 | 165 | NAC domain-containing protein 19 |
4dul_B | 2e-56 | 42 | 198 | 8 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00257 | DAP | Transfer from AT2G02450 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Bostr.0556s0069.2.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT000874 | 0.0 | BT000874.1 Arabidopsis thaliana clone C104984 putative NAM (no apical meristem) protein (At2g02450) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002875128.1 | 0.0 | NAC domain-containing protein 35 isoform X2 | ||||
Swissprot | Q9ZVP8 | 0.0 | NAC35_ARATH; NAC domain-containing protein 35 | ||||
TrEMBL | D7LQ36 | 0.0 | D7LQ36_ARALL; ANAC034/ANAC035 | ||||
STRING | Bostr.0556s0069.1.p | 0.0 | (Boechera stricta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G02450.1 | 0.0 | NAC domain containing protein 35 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Bostr.0556s0069.2.p |
Publications ? help Back to Top | |||
---|---|---|---|
|