PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.0124s0115.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | TCP | ||||||||
Protein Properties | Length: 403aa MW: 44337.8 Da PI: 7.3317 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 118.8 | 6.8e-37 | 51 | 167 | 2 | 118 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaa 91 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LGfd++sk+++WL+++ak ai++l++++ ++ ++ ++ ++++++++k Bostr.0124s0115.2.p 51 TGRKDRHSKVCTAKGPRDRRVRLSAPTAIQFYDVQDRLGFDRPSKAVDWLIKKAKSAIDDLAELPPWNPADTLRQHAAAANAKPRKTKTL 140 79**************************************************************44444344333333333334444444 PP TCP 92 ksaakskksqksaasalnlakesraka 118 s +++++++++++++++ ++++++ Bostr.0124s0115.2.p 141 ISPPPPQPPPHEETEHRHHLHHHNHQI 167 444444444444443333333333222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.1E-34 | 51 | 171 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 34.272 | 53 | 111 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic |
Sequence ? help Back to Top |
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Protein Sequence Length: 403 aa Download sequence Send to blast |
MAANYHLIDS PSPPLLEMRH NQSAFTAAAT ENGGGYGEIV EVEGGHIVRS TGRKDRHSKV 60 CTAKGPRDRR VRLSAPTAIQ FYDVQDRLGF DRPSKAVDWL IKKAKSAIDD LAELPPWNPA 120 DTLRQHAAAA NAKPRKTKTL ISPPPPQPPP HEETEHRHHL HHHNHQIGEE DNESSFLPAS 180 MDSDSIADTI KSFFPVASTQ QSFHQPPSRA NTRNQDLLRL SLQSFQNGPP FADQTEPVLF 240 SGQSTPLGFD SSTAGWDQNH QSPEFGKIQR LVTRNNGGAA DSAGGGGFVF ASPSSFQPVF 300 SQSQILSQRG PLQSINTPMI RAWFDPHHHH HHHHQSMTSD DHHYHHHPYH VPTGIHQSTI 360 PGIALASSGE FSGFRIPARF QGEQEEHGGK NKQSSASSDS RH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 4e-20 | 58 | 111 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 4e-20 | 58 | 111 | 1 | 54 | Putative transcription factor PCF6 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00203 | DAP | Transfer from AT1G53230 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.0124s0115.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC008007 | 0.0 | AC008007.7 Genomic sequence for Arabidopsis thaliana BAC F12M16 from chromosome I, complete sequence. | |||
GenBank | AF072134 | 0.0 | AF072134.1 Arabidopsis thaliana TCP3 mRNA, complete cds. | |||
GenBank | AY099678 | 0.0 | AY099678.1 Arabidopsis thaliana putative flower development protein cycloidea (At1g53230) mRNA, complete cds. | |||
GenBank | BT000266 | 0.0 | BT000266.1 Arabidopsis thaliana putative flower development protein cycloidea (At1g53230) mRNA, complete cds. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006304984.1 | 0.0 | transcription factor TCP3 | ||||
Swissprot | Q9MAH8 | 0.0 | TCP3_ARATH; Transcription factor TCP3 | ||||
TrEMBL | R0GPM5 | 0.0 | R0GPM5_9BRAS; Uncharacterized protein | ||||
STRING | Bostr.0124s0115.1.p | 0.0 | (Boechera stricta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53230.1 | 1e-176 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.0124s0115.2.p |
Publications ? help Back to Top | |||
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