PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast10G198900.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

GRAS

Protein Properties

Length: 673aa MW: 75477.8 Da PI: 6.3205

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast10G198900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	322.1	1.1e-98	292	663	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 l+ lLl+cA+ v+ ++++ a +lL++++++as +gd+ qRla++f+++L+ar+a+++s++yk+l +++ts +e l ++lf ++ + Brast10G198900.1.p 292 LRALLLSCAQEVAISNHQGAAKLLKQIRQHASATGDAAQRLAHCFAKGLEARMAGTGSKVYKSLVAKQTS---AIEFLRGYELFMAACSFR 379 5789***************************************************************9...9************* PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180 +++ +I a+ g++r+Hi+D+++++G QWp Ll La R++gpp++RiTg++ p++g ++++eetg+rL++ A+++g+pf+f++ Brast10G198900.1.p 380 RVALTFSSMTIFHAMRGKSRLHIVDYGVNYGCQWPGLLCWLAGRDGGPPEVRITGIDLPQPGfrPAKRIEETGQRLRNCARQFGLPFKFHA 470 *********************************************************9************************* PP GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfd 269 +a ++e++ +e+L+++p+E+l+Vn ++ +l+des+ ++ +rd vL+++++++P v++ + + ++ Fl+rf eal ++s++fd Brast10G198900.1.p 471 -IAAKWETIGVEDLNIDPDEVLVVNDLFNFNTLMDESLVTDRpsPRDVVLSTIRGMRPAVFIQGVVNGSS-GPFFLARFREALFFHSSVFD 559 .799*****************************98776669************998888776.89************** PP GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvl 360 +l+a+ prese+r ++Er ++g+ + n++acega+r+er et+++W+ r ++aG++++pl+ +++ a + ++ ++ + + v+ ++g+l++ Brast10G198900.1.p 560 MLDATTPRESEHRLVLERDMFGQCALNAIACEGADRVERPETYKQWQLRNRRAGLRQLPLRPIVVEVATSKVKSMYHKDFVVDVNQGWLLQ 650 ************************************************************************888******** PP GRAS 361 gWkdrpLvsvSaW 373 gWk+r L++ SaW Brast10G198900.1.p 651 GWKGRILYAHSAW 663 *********** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	57.271	266	644	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.8E-96	292	663	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 673 aa Download sequence Send to blast
MESIRPSLYK SDKLISHVLV ECRTITSSEF TMMPITPEEL LETVPPSPSA YLDIPLSPYG 60 DSVGDMVLPY ISRILMEEDI DDMFFYQYPD HPALLRAQQP FVEILNEARN LQSSEGGYIE 120 RMNFDASLQG GRGGSMFLAG KDIQSRAIFD AAEVDNHGDQ SKHSLYNEDM LNMSFLKGME 180 EANKFLPRDN KLQVSSFSVG QPRETFERSA SGRRRCDDGE EVVGRASKLM VTELEEDGAH 240 EMFEKAMLNS CDLNGETMEK LHTDMENAEA NRRNKKAVRG RQQGKRGDTV DLRALLLSCA 300 QEVAISNHQG AAKLLKQIRQ HASATGDAAQ RLAHCFAKGL EARMAGTGSK VYKSLVAKQT 360 SAIEFLRGYE LFMAACSFRR VALTFSSMTI FHAMRGKSRL HIVDYGVNYG CQWPGLLCWL 420 AGRDGGPPEV RITGIDLPQP GFRPAKRIEE TGQRLRNCAR QFGLPFKFHA IAAKWETIGV 480 EDLNIDPDEV LVVNDLFNFN TLMDESLVTD RPSPRDVVLS TIRGMRPAVF IQGVVNGSSG 540 PFFLARFREA LFFHSSVFDM LDATTPRESE HRLVLERDMF GQCALNAIAC EGADRVERPE 600 TYKQWQLRNR RAGLRQLPLR PIVVEVATSK VKSMYHKDFV VDVNQGWLLQ GWKGRILYAH 660 SAWVADDSSS DD*

Sequence ? help Back to Top

Protein Sequence Length: 673 aa Download sequence Send to blast

MESIRPSLYK SDKLISHVLV ECRTITSSEF TMMPITPEEL LETVPPSPSA YLDIPLSPYG  60
DSVGDMVLPY ISRILMEEDI DDMFFYQYPD HPALLRAQQP FVEILNEARN LQSSEGGYIE  120
RMNFDASLQG GRGGSMFLAG KDIQSRAIFD AAEVDNHGDQ SKHSLYNEDM LNMSFLKGME  180
EANKFLPRDN KLQVSSFSVG QPRETFERSA SGRRRCDDGE EVVGRASKLM VTELEEDGAH  240
EMFEKAMLNS CDLNGETMEK LHTDMENAEA NRRNKKAVRG RQQGKRGDTV DLRALLLSCA  300
QEVAISNHQG AAKLLKQIRQ HASATGDAAQ RLAHCFAKGL EARMAGTGSK VYKSLVAKQT  360
SAIEFLRGYE LFMAACSFRR VALTFSSMTI FHAMRGKSRL HIVDYGVNYG CQWPGLLCWL  420
AGRDGGPPEV RITGIDLPQP GFRPAKRIEE TGQRLRNCAR QFGLPFKFHA IAAKWETIGV  480
EDLNIDPDEV LVVNDLFNFN TLMDESLVTD RPSPRDVVLS TIRGMRPAVF IQGVVNGSSG  540
PFFLARFREA LFFHSSVFDM LDATTPRESE HRLVLERDMF GQCALNAIAC EGADRVERPE  600
TYKQWQLRNR RAGLRQLPLR PIVVEVATSK VKSMYHKDFV VDVNQGWLLQ GWKGRILYAH  660
SAWVADDSSS DD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	2e-40	296	663	8	374	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast10G198900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024319189.1	0.0	scarecrow-like protein 9
TrEMBL	A0A0Q3EKY5	0.0	A0A0Q3EKY5_BRADI; Uncharacterized protein
STRING	BRADI4G09160.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP231	31	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-133	SCARECROW-like 14

Link Out ? help Back to Top
Phytozome	Brast10G198900.1.p