PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast10G196100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | C2H2 | ||||||||
Protein Properties | Length: 157aa MW: 17099.8 Da PI: 11.2113 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.5 | 0.00046 | 53 | 75 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C Cg++F++ L H +H Brast10G196100.1.p 53 YECRSCGRRFRTFQALGGHRTSH 75 99**********99998888877 PP | |||||||
2 | zf-C2H2 | 15.2 | 6.2e-05 | 97 | 119 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg +F + L H+r+H Brast10G196100.1.p 97 HRCGTCGLVFATGQALGGHMRRH 119 79********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 2.1E-9 | 52 | 76 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.89E-7 | 53 | 119 | No hit | No description |
SMART | SM00355 | 0.46 | 53 | 75 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 12.009 | 53 | 80 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 55 | 75 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.13 | 97 | 119 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 1.1E-8 | 97 | 119 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.325 | 97 | 124 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 99 | 119 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
MDGVVVVSGR SRLLQRLLAA LSSSSPAPVI CKKKKKSSCS KLVLHLELED GAYECRSCGR 60 RFRTFQALGG HRTSHNRRPP PAGSRKLGKA ERSLLEHRCG TCGLVFATGQ ALGGHMRRHF 120 KRPPANIMAA AAWSSGSGGR EEEDDHAWKP RLIQFI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast10G196100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010238980.1 | 2e-49 | zinc finger protein ZAT11 | ||||
TrEMBL | I1IJ53 | 4e-48 | I1IJ53_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G09410.1 | 7e-49 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6730 | 26 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53600.1 | 6e-18 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast10G196100.1.p |