PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast10G195200.3.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 173aa    MW: 19343.8 Da    PI: 5.6495
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast10G195200.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.97.6e-16243548
                        -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +++E+ +++++++++G++ W++Ia +++ gRt++++k++w++++
  Brast10G195200.3.p  2 SPQEEHIIIELHARWGNR-WSRIAGRLP-GRTDNEIKNYWRTHM 43
                        89****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007173.3E-9145IPR001005SANT/Myb domain
CDDcd001677.22E-11143No hitNo description
PROSITE profilePS5129423.66147IPR017930Myb domain
PfamPF002491.6E-14242IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-20244IPR009057Homeodomain-like
SuperFamilySSF466892.18E-12248IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MSPQEEHIII ELHARWGNRW SRIAGRLPGR TDNEIKNYWR THMRKKAQER KTDMSPSSSC  60
SSFTYQSGLI QTAPITGKEE GSASNGSTCI SSVLKSNQSV MDGYSMDQIW REIEAPAMLP  120
IDDKACSNFP CPLLPSPMGD WHYPEVVWKM DDDDTKMLAP EFGYVTGGGS CY*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast10G195200.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3672181e-139AK367218.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2053B03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010237384.11e-118myb-related protein MYBAS1
SwissprotQ53NK61e-73MYBA1_ORYSJ; Myb-related protein MYBAS1
TrEMBLA0A0Q3PDA01e-116A0A0Q3PDA0_BRADI; Uncharacterized protein
STRINGBRADI4G09490.11e-108(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.13e-40myb domain protein 59
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]